A date would be helpful to figure out the latest version. Of course there could
also just be the silent contract that the return vector is ordered from oldest
to latest. Your Armadillo example below would only return Dasnov3.0, though.
UCSC does not appear to include any of the older two version
- Original Message -
> From: "Steffen Neumann"
> To: "Dan Tenenbaum"
> Cc: "bioc-devel"
> Sent: Wednesday, July 27, 2016 5:02:22 AM
> Subject: bioconductor/metabolomics Docker image available
> Hi Dan and BioC community!
>
> I now cleaned up my Bioconductor/bioc_docker
> and opened a
Martin and Michael,
It looks like I have been conflating two issues when trying to deal with
these things. The problem of grabbing the system libz seems to have gone
away in the Rsamtools case earlier than in the libR.so case during my
process. wwI will check back in if something raises it's head
Hi,
On 07/27/2016 04:49 AM, Hahne, Florian wrote:
> Valerie,
> I took a somewhat closer look at this, and I think that a mapping between
> Ensembl genome version and UCSC genome identifiers is all that is needed from
> the Bioconductor side.
OK, sounds good. Lori (lori.sheph...@roswellpark.org
Maybe Gabe could share the linker line. I think (from the man page) as
long as the directory with the static lib comes first with -L, it
should find the static lib, not the shared object.
On Wed, Jul 27, 2016 at 6:48 AM, Martin Morgan
wrote:
> Hi Gabe --
>
> On 07/21/2016 12:08 PM, Maintainer wro
Hi Gabe --
On 07/21/2016 12:08 PM, Maintainer wrote:
Hi all,
I build the R installations on our research cluster. Unfortunately we
are running an older OS so the system versions of various libraries
(libz, bz2, pcre and libcurl, specifically) are not modern enough to
build R with.
For protecti
Hi Dan and BioC community!
I now cleaned up my Bioconductor/bioc_docker
and opened a pull request to add a Metabolomics
Bioconductor [1].
This works on our Jenkins installation, where I regularly
build the devel_metabolomics [2] and release [3] images.
The image for the previous devel version
Valerie,
I took a somewhat closer look at this, and I think that a mapping between
Ensembl genome version and UCSC genome identifiers is all that is needed from
the Bioconductor side. I can figure out a way to identify the relevant Ensembl
archive to load during Gviz package build.
Biomart prov
Hi Dan,
Thanks for fixing it.
R.
On Tue, 26-07-2016, at 21:27, Dan Tenenbaum wrote:
> Hi Ramon,
>
> Thanks for letting us know about this. We've identified and fixed the problem.
>
> Dan
>
>
> - Original Message -
>> From: "Ramon Diaz-Uriarte"
>> To: "bioc-devel"
>> Cc: "ramon diaz"
Hi Valerie,
That sounds great!
I guess that I would try to keep all the mappings in a single file the next
time. The current code grew organically over time, and is not the nicest piece
of software I have ever written ☺
Let me take a closer look at this again over the next couple of days, and I m
10 matches
Mail list logo
