Re: [Bioc-devel] BiomartGeneRegionTrack question

2016-07-20 Thread James W. MacDonald
Hi Holly, This list is intended for those that are developing packages. Your question should be asked on the support site (https://support.bioconductor.org). Please repost over there. Best, Jim On Wed, Jul 20, 2016 at 2:04 PM, Holly wrote: > Dear Bioconductor helpers, > I am trying to plot

[Bioc-devel] BiomartGeneRegionTrack question

2016-07-20 Thread Holly
Dear Bioconductor helpers, I am trying to plot a region of interest using the Gviz package. I met error when running the following example code: > library(Gviz) > library(GenomicRanges) > bmTrack <- BiomartGeneRegionTrack(start=26682683, end=26711643, + chromosome=7, genome="mm9") Entity 'nbsp' no

Re: [Bioc-devel] Conflicting Imports in Namespace

2016-07-20 Thread Martin Morgan
On 07/20/2016 03:12 AM, Aaron Taudt wrote: Hi, I have a package which imports the two functions ggdendro::segment and DNAcopy::segment. This leads to a warning message when checking the package: Warning: replacing previous import ‘DNAcopy::segment’ by ‘ggdendro::segment’ when loading ‘AneuFinde

[Bioc-devel] Conflicting Imports in Namespace

2016-07-20 Thread Aaron Taudt
Hi, I have a package which imports the two functions ggdendro::segment and DNAcopy::segment. This leads to a warning message when checking the package: Warning: replacing previous import ‘DNAcopy::segment’ by ‘ggdendro::segment’ when loading ‘AneuFinder’ How can I avoid this warning and properly