To complete my previous email, here's the issue:
> library(rtracklayer)
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘pack
In save() you can use the "list" argument to give object names. So
save(list = sample[i], file=paste0(sample.name[i],".rda"))
should work.
Best,
Kasper
On Thu, Jul 14, 2016 at 9:21 AM, Obenchain, Valerie <
valerie.obench...@roswellpark.org> wrote:
> Hi,
>
> There may be more elegant ways but
Hi,
There may be more elegant ways but here is one solution.
sample.name <- c("ABC_study_provider", "XYZ_study_provider")
lapply(sample.name,
function(xx) {
filename <- paste0(xx, ".rda")
## make the GAlignmentPairs
## ...
xx <- GAlignmentPairs()
save(x
dear Valerie,
This is a simple R question, but I can't seem to find the answer. I'm
assuming ExperimentHub wants object created by save() and not
saveRDS().
In make-data.R, I have a loop where I programmatically make a
GAlignmentPairs object for each of 4 samples. I'm then using assign()
to assig
