Well, combine() has been extremely useful in my work and I would love to
have a version for SummarizedExperiment's. I do appreciate that it might
not be the job of cbind.
merge did the work for me for DataFrame's.
Best,
Kasper
On Tue, Jul 12, 2016 at 4:24 PM, Hervé Pagès wrote:
> Hi Kasper,
>
Hi Johannes,
On 07/12/2016 09:06 AM, Johannes Helmuth wrote:
Dear Bioconductor Developers,
I use `Rhtslib` in two Bioconductor packages, namely `bamsignals` and
`normr`. Apparently, the development version of `Rhtslib` (version
1.5.3) fails on install because automake is not available on the
Bi
Hi Kasper,
On 07/12/2016 09:31 AM, Kasper Daniel Hansen wrote:
combine() is the old style way of combining ExpressionSets and friends and
is pretty powerful, for example dealing with pData objects with different
columns (which is the case for almost all data).
It seems to me that cbind() on Sum
- Original Message -
> From: "Chakravarthi Kanduri"
> To: "bioc-devel"
> Sent: Tuesday, July 12, 2016 12:37:29 PM
> Subject: Re: [Bioc-devel] GenRank package build error 0.99.4
> Dear Bioconductor developers,
>
> The latest build of GenRank package (development version) shows error
>
Dear Bioconductor developers,
The latest build of GenRank package (development version) shows error
(http://bioconductor.org/checkResults/devel/bioc-LATEST/GenRank/).
The package was built successfully on my local computer and on Travis,
but fails on Bioconductor build system. When I checked th
Seems like merge() might be the appropriate verb here.
On Tue, Jul 12, 2016 at 9:31 AM, Kasper Daniel Hansen
wrote:
> combine() is the old style way of combining ExpressionSets and friends and
> is pretty powerful, for example dealing with pData objects with different
> columns (which is the case
obviously "cannot do the coverage report"
On Tue, Jul 12, 2016 at 12:32 PM, Kasper Daniel Hansen <
kasperdanielhan...@gmail.com> wrote:
> Without knowing the details it seems self-evident to me that the build
> system can do the coverage report if the package doesn't build.
>
> Best,
> Kasper
>
>
Without knowing the details it seems self-evident to me that the build
system can do the coverage report if the package doesn't build.
Best,
Kasper
On Tue, Jul 12, 2016 at 12:29 PM, Johannes Helmuth
wrote:
> Dear Bioconductor Developers,
>
> I recently contributed a package `normR` for calling
combine() is the old style way of combining ExpressionSets and friends and
is pretty powerful, for example dealing with pData objects with different
columns (which is the case for almost all data).
It seems to me that cbind() on SummarizedExperiments is much less
powerful. Specifically rbind() on
Dear Bioconductor Developers,
I recently contributed a package `normR` for calling enrichment and
differences in ChIP-seq data (http://bioconductor.org/packages/normr/).
To test the functionality of the package, I used `testthat`. All the
tests run well when using `testthat::test()`, `R CMD bu
Dear Bioconductor Developers,
I use `Rhtslib` in two Bioconductor packages, namely `bamsignals` and
`normr`. Apparently, the development version of `Rhtslib` (version
1.5.3) fails on install because automake is not available on the
Bioconductor build system (see
http://bioconductor.org/checkR
Developers,
We're temporarily switching to a 48-hour (instead of 24-hour) build
cycle for devel packages. The new schedule is as follow:
1) Builds will start on Saturdays, Mondays, and Wednesdays at 7:15 pm
(Seattle time) every week.
2) Build reports will be generated about 32 hours la
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