> We have been using snakemake (python-based, but essentially a domain
> language) with some pretty nice results. Nextflow (groovy-based) and Toil
> are another couple that I am watching closely. The Broad just released WDL
> and associated executors. And common-workflow-language (CWL) is gai
Vince,
thanks a lot for the example streaming dbSNP over the internet and how
this is even faster than accessing the data locally. to me, this just
confirms that the current performance of the
SNPlocs.Hsapiens.dbSNP144.GRCh37 annotation package can be improved.
Hervé will look at it and hopef
Hello all,
We want to share results from this survey during developer day at the
upcoming BioC 2016. We've had great participation but want to encourage
those who haven't taken the survey yet to consider doing so in the next
couple of days.
https://umdsurvey.umd.edu/SE/?SID=SV_5bXhBBZ8cKY08yp
T
I've no idea what exactly I did or how I did it, but I'd somehow ended
up with some core packages out of sync. Fixed with
BiocInstaller::biocValid() and following advice therein. Sorry for the
noise.
On 20 June 2016 at 21:26, Martin Morgan wrote:
> On 06/20/2016 09:22 PM, Leonardo Collado Torres
Hi Robert,
Thanks for report this. I'll look into it.
H.
On 06/17/2016 09:53 AM, Robert Castelo wrote:
hi,
the performance of snpsByOverlaps() in terms of time and memory
consumption is quite poor and i wonder whether there is some bug in the
code. here's one example:
library(GenomicRanges)
