Hi Leonard,
I really like having 'use.names' before 'use.mcols'. Sorry for breaking
SGSeq, I'll fix it.
FWIW I think it's good practice to always name this kind of arguments.
Not the first argument 'x' or the first 2 arguments 'x' and 'y' of a
unary or binary function, but the toggles that follo
Hi Hervé,
I noticed a recent change in the release and development version of
GenomicRanges, which introduces a new argument 'use.names' for granges()
and other functions.
The change breaks the SGSeq package, since it uses granges() relying on
positional argument matching (and 'use.names' has bee
