Re: [Bioc-devel] can't find an annotation package

Hi, Just to clarify, annotation packages are not in an svn repo like the software and data experiment packages. We drop the tarballs we receive from contributors directly into the public package repos. H.. On 04/28/2016 08:08 AM, Dan Tenenbaum wrote: Annotation packages are not in a public rep

[Bioc-devel] Question: set purification test for overlapped regions between three GRanges object

Dear Mailing list: I got stuck with implementing wrapper function for my packages. when three GRanges objects (e.g. a,b,c) are given to my function, I would like to find overlapped regions from one to another in parallel, where a as query, b,c are subjects respectively. Because of three input was

Re: [Bioc-devel] can't find an annotation package

Annotation packages are not in a public repository. You can get the tarball from the package landing page. Here's the devel (soon to be release) version: https://www.bioconductor.org/packages/devel/data/annotation/html/LowMACAAnnotation.html Dan - Original Message - > From: "Giorgio M

[Bioc-devel] can't find an annotation package

Dear all, I was doing some debugging on a package submitted a year ago (LowMACA) that is accompanied by an annotation package (LowMACAAnnotation). I am able to svn checkout LowMACA here: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/LowMACA , but I cannot find a way to checkout th