Hi Vince
Agreed, I agree fData is over-simplification. But if data have an
associated "annotation", the feature annotation associated with it
should be available.
I was recently trying to map between one of the hugene st1.0 and
primeview arrays. The first has multiple .db packages (including
I am in favor of simplifying the binding of useful metadata to our
genome-wide objects. Before we automate this I think we
should define a widely applicable procedure for this task ... and see how
it works in examples from the ExperimentData library and
ExperimentHub. Using fData for ExpressionSe
Hi
Using select/mapIDs to annotate probe IDs is an additional step that
confuses many.
May I suggest we automatically populate fData with minimal annotation
(ProbeID, entrez ID, symbol) if a known platform is detected. We
record the version and parameters (eg mapIDs multi=first) used to cre
What Martin is hinting at, is that if you end up depending on a package
which is really hard to install, your users indirectly will suffer. And
that should be a consideration when you choose to depend on another package.
I have certainly had situations where I have tried to avoid depending on
pac
On 04/20/2016 12:14 PM, Zach Skidmore wrote:
Hi All,
I'm curious what the preferred method is for dealing with System
Requirements originating from an imported package. For example, if I had
a package that imported `biomaRt` which itself imports `XML` which has
the SystemRequirement `libxml2`
Hi All,
I'm curious what the preferred method is for dealing with System
Requirements originating from an imported package. For example, if I had
a package that imported `biomaRt` which itself imports `XML` which has
the SystemRequirement `libxml2` how is that dealt with? Are package
installe
Also, if your issue is the size (and not runtime) of the vignette files,
chances are that this could be fixed. Whatever you produce manually as
pdf, you should be able to get using the build system. Do you have code
somewhere (Github? elsewhere?).
Kasper
On Wed, Apr 20, 2016 at 9:19 AM, Martin
On 04/20/2016 01:22 AM, Samuel Wieczorek wrote:
Hi
I am the developper of the packages DAPAR and Prostar. Each of these
packages contains two vignettes : a user manual and an tutorial.
As these documents contain screen shots, I have to join the images (png
files) in the packages in addition of
