Re: [Bioc-devel] rhdf5 and left-justified output in h5ls - is this sensible?

2016-04-12 Thread Aaron Lun
Sorry for any inconvenience. I just wanted to change ‘aesthetics’, but not ‘expected behaviour of the function’. I moved the format call from h5ls to the show method. Ah, aesthetics. My old arch-nemesis... Will be effective in version 2.15.7 from tomorrow on. The function works great now, th

Re: [Bioc-devel] moscato2 Windows build error reading IDAT file

2016-04-12 Thread Kasper Daniel Hansen
Yes. But I agree it is _really_ weird since minfi and illuminaio builds without problems on Windows. Kasper On Tue, Apr 12, 2016 at 2:53 AM, Maarten van Iterson wrote: > Dear Dan and Henrik, > > Thank you for looking into this! > > So if I understand correctly the check error will disappear on

Re: [Bioc-devel] package submission - problem with vignette

2016-04-12 Thread Kasper Daniel Hansen
This directive %\VignetteEncoding{UTF-8} is a message to R about the vignette encding. This directive %\usepackage[UTF8]{inputenc} is a latex command. Kasper On Tue, Apr 12, 2016 at 7:17 AM, Karim Mezhoud wrote: > Hi, > I don't know why I have to use > %\VignetteEncoding{UTF-8} > instead > %

Re: [Bioc-devel] package submission - problem with vignette

2016-04-12 Thread Karim Mezhoud
Hi, I don't know why I have to use %\VignetteEncoding{UTF-8} instead %\usepackage[UTF8]{inputenc} it works. On Tue, Apr 12, 2016 at 8:38 AM, Karim Mezhoud wrote: > Dear Lara and Dan, > In my case I am having this error. Thanks > > * creating vignettes ... ERROR > Error: Vignette 'bioCancer.Rmd

Re: [Bioc-devel] package submission - problem with vignette

2016-04-12 Thread Karim Mezhoud
Dear Lara and Dan, In my case I am having this error. Thanks * creating vignettes ... ERROR Error: Vignette 'bioCancer.Rmd' is non-ASCII but has no declared encoding Execution halted Error: Command failed (1) Execution halted Exited with status 1. I am setting vignette using knitr package. In