My only concern regarding AnnotationHub is offline use. I find that I'm more
productive if I turn off the network interface altogether... Maybe I'm the only
one. BiomaRt also scarred me a little.
--t
> On Apr 7, 2016, at 8:34 AM, Vincent Carey wrote:
>
>
>
>> On Thu, Apr 7, 2016 at 11:24 A
On Thu, Apr 7, 2016 at 11:24 AM, Tim Triche, Jr.
wrote:
> Great! This is an awesome opportunity to move to ENSEMBL as a default ;-)
> (only half kidding, by the way)
>
> 1) BSGenome/2bit would be great -- I use this sometimes to generate fusion
> transcripts with defined breakpoints to supplemen
Great! This is an awesome opportunity to move to ENSEMBL as a default ;-)
(only half kidding, by the way)
1) BSGenome/2bit would be great -- I use this sometimes to generate fusion
transcripts with defined breakpoints to supplement existing txomes
2) class name: don't change it
3) pre made pa
On Thu, Apr 7, 2016 at 10:34 AM, Obenchain, Valerie <
valerie.obench...@roswellpark.org> wrote:
> BioC developers,
>
> After the release we plan to continue development the OrganismDb class
> and packages. This email outlines some ideas for future direction. We're
> interested in feedback on these
The mzR maintainers are aware of the issue, which has to do with the new
windows toolchain. They are working on it.
Dan
- Original Message -
> From: "Samuel Wieczorek"
> To: "bioc-devel"
> Sent: Thursday, April 7, 2016 1:28:00 AM
> Subject: [Bioc-devel] Build error on Moscato2
> Hi
>
BioC developers,
After the release we plan to continue development the OrganismDb class
and packages. This email outlines some ideas for future direction. We're
interested in feedback on these points as well as other thoughts people
might have.
## Background
The OrganismDb class is defined in th
As we exchanged in separate email, I think that the SIZE of this data
does NOT require that you produce an annotation package.
The package guidelines
http://bioconductor.org/developers/package-guidelines/#correctness say
that the package should occupy less than 4MB on disk. Your package has
Hi Samuel,
On Do, 2016-04-07 at 10:28 +0200, Samuel Wieczorek wrote:
[...]
>
> which needs the mzR package.
> The latter package has build error since a few days and this
> propagates
> errors on the other packages.
We're painfully aware of the build failure of mzR. I opened an issue
for it on
On 04/07/2016 03:54 AM, Karim Mezhoud wrote:
unfortunately,
Bioconductor version 3.3 (BiocInstaller 1.21.4), ?biocLite for help
Bioconductor does not yet support R version 3.4.0
The release of Bioconductor on May 4 and the next release in the fall
will both be based on the R-3.3.* series, b
Hi
my packages (DAPAR and Prostar) are dependant of the package MSnbase
which needs the mzR package.
The latter package has build error since a few days and this propagates
errors on the other packages.
What will happen for these other packages in the next release if mzR is
not correctly buil
unfortunately,
Bioconductor version 3.3 (BiocInstaller 1.21.4), ?biocLite for help
Bioconductor does not yet support R version 3.4.0
On Tue, Apr 5, 2016 at 9:17 PM, Michael Lawrence
wrote:
> You need R 3.4 for right now.
>
> On Tue, Apr 5, 2016 at 1:16 PM, Karim Mezhoud wrote:
> > ==> R CMD IN
11 matches
Mail list logo
