Re: [Bioc-devel] ExperimentHub and existing data in AnnotationHub

On 03/15/2016 04:05 PM, Laurent Gatto wrote: > On 15 March 2016 21:45, Obenchain, Valerie wrote: > >> Hi Laurent, >> >> ExperimentHub won't be in the next release but will be active in the >> next devel (Bioconductor 3.5). If you want to move your data from >> AnnotationHub to ExperimentHub I can h

[Bioc-devel] deprecate methyAnalysis package

Hi all, We're cleaning up the build reports for the next release and are actively deprecating broken packages with non-responsive maintainers. methyAnalysis has been broken in devel for a few months: http://www.bioconductor.org/checkResults/devel/bioc-LATEST/ We have not heard from the maintaine

Re: [Bioc-devel] ExperimentHub and existing data in AnnotationHub

On 15 March 2016 21:45, Obenchain, Valerie wrote: > Hi Laurent, > > ExperimentHub won't be in the next release but will be active in the > next devel (Bioconductor 3.5). If you want to move your data from > AnnotationHub to ExperimentHub I can help with that but not until after > the release. We

Re: [Bioc-devel] ExperimentHub and existing data in AnnotationHub

Hi Laurent, ExperimentHub won't be in the next release but will be active in the next devel (Bioconductor 3.5). If you want to move your data from AnnotationHub to ExperimentHub I can help with that but not until after the release. We don't have a formal policy but it seems reasonable for the 'mor

Re: [Bioc-devel] Register native routines

Yes, I could reproduce the error with CXXFLAGS = -O0 and fixed it with the suggestions in http://stackoverflow.com/questions/11055802/static-and-extern-global-variables-in-c-and-c by replacing extern with const.

Re: [Bioc-devel] Register native routines

On 03/15/2016 12:30 PM, Aaron Taudt wrote: I know they were not registered because BiocCheck told me so. In addition, getDLLRegisteredRoutines('AneuFinder') returned an empty data.frame. But wrapping the R_init_ in an extern "C" block solved the problem: extern "C" { void R_init_AneuFinder(Dll

Re: [Bioc-devel] Register native routines

I know they were not registered because BiocCheck told me so. In addition, getDLLRegisteredRoutines('AneuFinder') returned an empty data.frame. But wrapping the R_init_ in an extern "C" block solved the problem: extern "C" { void R_init_AneuFinder(DllInfo *dll) { R_registerRoutines(dll, CEntri

Re: [Bioc-devel] Register native routines

Hi Aaron -- On 03/15/2016 08:40 AM, Aaron Taudt wrote: I am trying to register my native routines as recommended by BiocCheck. I followed the instructions in "Writing R Extensions" and have implemented the following code in "init.cpp". However, the routines are still not registered. #include #

[Bioc-devel] Register native routines

I am trying to register my native routines as recommended by BiocCheck. I followed the instructions in "Writing R Extensions" and have implemented the following code in "init.cpp". However, the routines are still not registered. #include #include #include "R_interface.h" // contains univariate_