Hi Pete,
I'll look into this. Thanks!
H.
On 02/10/2016 12:33 PM, Peter Hickey wrote:
The assays slot in a SummarizedExperiment object supports elements
with up to 4 dimensions [*]
library(SummarizedExperiment)
makeSE <- function(n) {
assay <- array(1:2^n,
dim = rep(2, n),
OK, I looked into this a bit. The citation is there now and I will continue to
look into this.
Dan
- Original Message -
> From: "Michael Love"
> To: "Dan Tenenbaum"
> Cc: "bioc-devel"
> Sent: Monday, February 15, 2016 7:36:14 AM
> Subject: Re: [Bioc-devel] package citation and version
Hi Michael,
Thanks for the reply.
I created a minimal reproducible package with the issue. As it seems the
warning comes because I have a 'data' folder where I have stored some
example data, and one of the data is stored in GRanges format.
If I delete the GRanges example data and keep any other d
Hi Joris,
Apologies for not including the NAMESPACE file, but I have included the
methods package also there, although I have used:
importFrom(methods,is)
since I just need the is() function for the time being.
Regards,
Andreas
--
Chantri
It would be helpful to have a reproducible example, i.e., your actual
package or a skeleton of it that reproduces the issue. Btw, you might
be able to debug this behavior by:
debug(tools::undoc)
tools::undoc(dir=yourPackageDir)
On Mon, Feb 15, 2016 at 7:52 AM, Andreas Kapouranis
wrote:
> Hi,
>
Hi Andreas,
for a good understanding: just mentioning the methods package in the
DESCRIPTION file isn't doing a thing if you don't also add
import(methods)
to the NAMESPACE file.
So it looks like the warning occurs when the package indicates that the
methods package is imported when it actually
Hi,
I am developing a package for Bioconductor, and I have a weird issue when
importing the 'methods' package. Before I add the 'methods' package in
Imoprts in the DESCRIPTION file, I pass the CMD check without any warnings.
However, when I add the 'methods' package in the Imports field, I get a
hi Dan,
I'm having the same issue with tximport:
http://bioconductor.org/packages/devel/bioc/html/tximport.html
The CITATION file has been in there since the package was added to devel
last week
https://github.com/Bioconductor-mirror/tximport/blob/master/inst/CITATION
citation("tximport") work
Hi (mostly Hervé)
I’m running into problems trying to run fasta.index() from Biostrings on a list
of 4700 files, as the limit on open files are reached. Is it possible to
continuously open and close the connections in the C code to circumvent this? I
expect this problem also arises with readXSt
