So it turns out there is not going to be a build report for windows in devel
today, for an unrelated reason. But it should be ok in tomorrow's build.
Dan
- Original Message -
> From: "Samuel E Zimmerman"
> To: "Dan Tenenbaum"
> Cc: "bioc-devel"
> Sent: Wednesday, January 27, 2016 10:
Dear BioGrid,
We find that the url shown below runs without an end. One of our
Bioconductor/PSICQUIC users (cc’d here) encountered this from within R, but
kindly (using our quiet=FALSE option) tracked down the REST url which seems to
run forever:
$curl
'http://tyersrest.tyerslab.com:8805/psi
Great. Thank you for the quick reply and solution!
Sam
From: Dan Tenenbaum [dtene...@fredhutch.org]
Sent: Wednesday, January 27, 2016 11:43 AM
To: Samuel E Zimmerman
Cc: bioc-devel
Subject: Re: [Bioc-devel] package passes R CMD BUILD on Linux (Ubuntu) but n
- Original Message -
> From: "Samuel E Zimmerman"
> To: "bioc-devel"
> Sent: Wednesday, January 27, 2016 8:35:24 AM
> Subject: [Bioc-devel] package passes R CMD BUILD on Linux (Ubuntu) but not
> Windows Server 2008
> Hi Everyone,
>
> When I uploaded my package to Bioconductor it pass
Hi Everyone,
When I uploaded my package to Bioconductor it passed all tests for the Linux
OS, but failed on the Windows Server. The error is below.
Warning: running command '"c:\MikTex2.9\miktex\bin\texify.exe" --quiet --pdf
"pathVar.tex" --max-iterations=20 -I
"E:/biocbld/bbs-3.3-bioc/R/shar
Hi Yu,
It looks like you’re using R Markdown v2 instead of R Markdown v1 so you will
have to change your vignette engine.
Your vignette likely contains %\VignetteEngine{knitr::knitr}
You will need to change this to %\VignetteEngine{knitr::rmarkdown}
And you will need to add both knitr and rmarkdo
The error message explains the reason. Just install pandoc and pandoc-citeproc.
Ge
On 27/01/2016, 14:20, "Bioc-devel on behalf of Yu Sun"
wrote:
>Hi,
>
>I am very new in developing bioconductor packages, and had an annoying
>problem yesterday afternoon. I wrote a package named sscu and it u
Hi,
I am very new in developing bioconductor packages, and had an annoying
problem yesterday afternoon. I wrote a package named sscu and it used to
have no problem to build a tarball, and I plan to submit it to Bioconductor
very soon. But yesterday after I updated my bioconductor packages using th
Dear all,
I am querying the PSICQUIC resource using the identically names
Bioconductor package. The query described in the vignette works as
expected.
> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient',
> show.error.locations=TRUE)
> suppressPackageStartupMessages(library(PSI
On 27 January 2016 10:38, Samuel Wieczorek wrote:
> Hi all
> Yetserday, i wanted to commit a new developement of my package DAPAR.
> The dependancies are not different then the previous dev version but
> when automatic install step on the Windows platform ( /moscato2/) , I
> got the following
Hi all
Yetserday, i wanted to commit a new developement of my package DAPAR.
The dependancies are not different then the previous dev version but
when automatic install step on the Windows platform ( /moscato2/) , I
got the following message : ERROR: dependency 'MSnbase' is not available
for p
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