Re: [Bioc-devel] Doubts about version numbers and git-snv bridge

- Original Message - > From: "Alessandro Mammana" > To: "bioc-devel" > Sent: Monday, January 18, 2016 8:19:19 AM > Subject: [Bioc-devel] Doubts about version numbers and git-snv bridge > Dear bioc-coders, > > it's a long time I don't push an update to my package "bamsignals" so > that

[Bioc-devel] topGO - BPontology Building most specific GOs ..... ontology: BP colnames Entry GO CC BP MF PE ( 2631 GO terms found. ) Build GO DAG topology .......... There are no adj nodes for node: G

I am trying to run topGO but new("topGOdata", relatively frequently produces this kind of errors for some selectedSet and backgroundSet. MF ontology Building most specific GOs . ontology: MF colnames Entry GO CC BP MF PE ( 725 GO terms found. ) Build GO DAG topology .. There are no

[Bioc-devel] Doubts about version numbers and git-snv bridge

Dear bioc-coders, it's a long time I don't push an update to my package "bamsignals" so that I almost forgot how to do that :D I have a doubt about version numbers. Currently the GitHub repository, which is mirrored to the svn repository, has the version 1.1.0 in it. According to the website http

[Bioc-devel] GenomicFeatures::extractTranscriptSeqs setMethod suggestion

Dear all, I’m having hard times to extend the extractTranscriptSeqs method implemented in GenomicFeatures. Basically, I would like to implement a method for signature(x="ANY”, transcripts="EnsDb”), so that I can re-use the method from GenomicFeatures and add the optional parameter “filter” whic