Re: [Bioc-devel] SummarizedExperiment with alternate back end

2015-09-19 Thread Vincent Carey
On Fri, Sep 18, 2015 at 8:36 PM, Kasper Daniel Hansen < kasperdanielhan...@gmail.com> wrote: > Interesting, thanks for the pointer. > > In light of the existing (and future) work on this, may I suggest an eSet > like class, but build using the technologies in SummarizedExperiment. Ie. > a Summari

Re: [Bioc-devel] SummarizedExperiment with alternate back end

2015-09-19 Thread Benilton Carvalho
A long time ago, I created this (on top of rhdf5), which I often use when I need to use hdf5 files: https://github.com/benilton/rhdf5utils On Sat, Sep 19, 2015, 07:12 Morgan, Martin wrote: > Two less baked ideas are > > https://github.com/PaulPyl/h5array > > which could be used in the assay(

Re: [Bioc-devel] SummarizedExperiment with alternate back end

2015-09-19 Thread Morgan, Martin
Two less baked ideas are https://github.com/PaulPyl/h5array which could be used in the assay() of SummarizedExperiment, and https://github.com/nhayden/h5robj which translates R objects to hdf5. Martin > -Original Message- > From: Bioc-devel [mailto:bioc-devel-boun...@r-project.o