On Tue, Aug 4, 2015 at 3:00 PM, Martin Morgan
wrote:
> On 08/04/2015 06:43 AM, Nathan Olson wrote:
>
>> We are starting to work on an infrastructure for annotation of 16S
>> metagenomic
>> sequencing datasets and would like your comments and/or contributions.
>> Below are
>> links to two github r
On 08/04/2015 06:43 AM, Nathan Olson wrote:
We are starting to work on an infrastructure for annotation of 16S metagenomic
sequencing datasets and would like your comments and/or contributions. Below are
links to two github repositories: metagenomeFeatures and greengenes13.5MgDb.
The metagenomeFe
On 08/04/2015 03:06 AM, Vincent Carey wrote:
Thanks for all input. Henrik's comments deserve to be in WRE or developer
doc for bioc, IMHO.
yes, was there any attempt to get something more in WRE? Martin
On Tue, Aug 4, 2015 at 3:02 AM, Henrik Bengtsson
wrote:
You can mix any type and numb
- Original Message -
> From: "Witold E Wolski"
> To: "Dan Tenenbaum"
> Cc: bioc-devel@r-project.org
> Sent: Tuesday, August 4, 2015 9:07:32 AM
> Subject: Re: [Bioc-devel] Bug tracking for packages
>
>
> Everything smooth and documented. Just tried it out. OK. What I did
> not see on t
Everything smooth and documented. Just tried it out. OK. What I did not
see on the instructions is that to track issues you need to reenable this
feature in the project settings of your forked. Issue tracking is disabled
for the read only mirrors. If it isn't there maybe it could be added.
cheers
Maybe the website needs a more obvious link to a guide on reporting issues
(basically what Dan just wrote)? It could even have a form (preferably with
type-ahead) that would let the user enter the package name, and it would
forward the client to the appropriate place (new github issue, support
site
Thanks Vince,
I think we just fixed that:
https://github.com/HCBravoLab/greengenes13.5MgDb/issues/1#issuecomment-127649449
Cheers,
Hector
On Tue, Aug 4, 2015 at 10:45 AM, Vincent Carey
wrote:
> very interesting development, we have several folks who will take a look.
>
> FYI
>
> %vjcair> R CMD
- Original Message -
> From: "Witold E Wolski"
> To: bioc-devel@r-project.org
> Sent: Tuesday, August 4, 2015 5:28:55 AM
> Subject: [Bioc-devel] Bug tracking for packages
>
> Bug/issue tracking needed. Does bioconducotor provides any for the
> packages
> hosted?
>
Do you want to repor
very interesting development, we have several folks who will take a look.
FYI
%vjcair> R CMD INSTALL greeng*b
Bioconductor version 3.2 (BiocInstaller 1.19.9), ?biocLite for help
Loading required package: digest
Loading required package: tools
Loading required package: utils
Loading required
We are starting to work on an infrastructure for annotation of 16S
metagenomic sequencing datasets and would like your comments and/or
contributions. Below are links to two github repositories:
metagenomeFeatures and greengenes13.5MgDb. The metagenomeFeatures package
contains two classes; mgDb, fo
Bug/issue tracking needed. Does bioconducotor provides any for the packages
hosted?
best
--
Witold Eryk Wolski
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Thanks for all input. Henrik's comments deserve to be in WRE or developer
doc for bioc, IMHO.
On Tue, Aug 4, 2015 at 3:02 AM, Henrik Bengtsson
wrote:
> You can mix any type and number of vignette formats in a package. What
> vignette engine is used is solely specified by the
> %\VignetteEngine{
You can mix any type and number of vignette formats in a package. What
vignette engine is used is solely specified by the
%\VignetteEngine{::} markup string. You don't need to specify
this for the default Sweave format, but you can as:
%\VignetteEngine{utils::Sweave}
For your knitr vignette you'd
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