Re: [Bioc-devel] Meta-information about bioc and bioc-package releases

- Original Message - > From: "Gabe Becker" > To: "Dan Tenenbaum" > Cc: "Gabe Becker" , "csardi gabor" > , bioc-devel@r-project.org > Sent: Wednesday, May 27, 2015 3:32:35 PM > Subject: Re: [Bioc-devel] Meta-information about bioc and bioc-package > releases > > > Dan, > > > Thanks

Re: [Bioc-devel] Meta-information about bioc and bioc-package releases

Dan, Thanks for the quick response. Unfortunately I am hoping for something I can access with base R, including older versions, which precludes https and curl. Is there any way to have a public facing url that hosts that file, or a webservice which returns it directly? Best, ~G On Wed, May 27, 2

Re: [Bioc-devel] best way to transition users to new version of package

Robert with the packages cellHTS, cellHTS2 and DESeq, DESeq2 (and with the functions vsn, vsn2 in the vsn package) I three times chose route 1, and am generally happy about it. In due time, you can deprecate and then defunct the old one. Option 2 seems needlessly disruptive (potentially). A lar

Re: [Bioc-devel] Meta-information about bioc and bioc-package releases

- Original Message - > From: "Gabe Becker" > To: bioc-devel@r-project.org > Cc: "csardi gabor" > Sent: Wednesday, May 27, 2015 10:31:43 AM > Subject: [Bioc-devel] Meta-information about bioc and bioc-package releases > > Hey all, > > I've been wondering if bioc could offer a way to qu

[Bioc-devel] Meta-information about bioc and bioc-package releases

Hey all, I've been wondering if bioc could offer a way to query information about itself similar - though not necessarily identical - to what Gabor Csardi's (cc'ed) crandb offers http://www.r-pkg.org/services#api Basically, I would really like two things, in i

Re: [Bioc-devel] missing font causes build warning on bioc release packages

Hi, - Original Message - > From: "Ludwig Geistlinger" > To: bioc-devel@r-project.org > Sent: Wednesday, May 27, 2015 6:54:33 AM > Subject: [Bioc-devel] missing font causes build warning on bioc release > packages > > Dear Bioc Team, > > As far as I am aware this applies to the w

[Bioc-devel] support site / tracker / registration site - scheduled downtime tomorrow

Hi all, The following sites will be down for 20 minutes or less beginning at 6AM (Seattle time) tomorrow, Thursday, May 28. - Support site - Package submission tracker - Conference/course registration Thanks, Dan ___ Bioc-devel@r-project.org mail

[Bioc-devel] best way to transition users to new version of package

I am the author and maintainer of the categoryCompare package on Bioconductor. As I and others have used it over the years, I am seeing that there are a lot of design mistakes in the code, and that it was not extensible in it's current form. Therefore, I decided to do a complete rewrite starting fr

[Bioc-devel] missing font causes build warning on bioc release packages

Dear Bioc Team, As far as I am aware this applies to the web pages of all released bioc packages http://www.bioconductor.org/packages/release/bioc/html/.html The new tags on the head of the page issue a build warning that is caused during check on moscato2: The warning reads: * checking PDF ve