Hi,
On 04/17/2015 09:42 AM, Hervé Pagès wrote:
Hi,
I think we should just expand the Rle internally. That will produce
a numeric vector of the length of the GRanges i.e. it will be the
same size as the start and end components of the GRanges object itself.
No big deal at all.
I'll make that ch
Thanks Martin. I had one other test case that resulted in a segfault.
I just tried Rsamtools 1.21.1 and both cases work fine with the new
version. Thanks for your help and for fixing this so quickly.
Leonard
On Mon, Apr 20, 2015 at 10:59 AM, Martin Morgan wrote:
> On 04/17/2015 09:12 AM, Martin
Hi all,
As part of our ongoing response to Michael Love's request for more information
when things happen with the build system, today in the devel (3.2) build
reports we see some packages failing in response to some methods (seqapply(),
mseqapply(), tseqapply(), seqsplit(), and seqby()) being
Thanks Dan and Nicolas!
I'll likely upgrade my Mac OS soon(ish), but use R-3.2.0-patched until then.
On Mon, Apr 20, 2015 at 3:32 PM, Dan Tenenbaum wrote:
>
>
> - Original Message -
>> From: "Dan Tenenbaum"
>> To: "Leonardo Collado Torres"
>> Cc: bioc-devel@r-project.org
>> Sent: Frida
- Original Message -
> From: "Dan Tenenbaum"
> To: "Leonardo Collado Torres"
> Cc: bioc-devel@r-project.org
> Sent: Monday, April 20, 2015 12:32:30 PM
> Subject: Re: [Bioc-devel] R 3.3 for snow leopard
>
>
>
> - Original Message -
> > From: "Dan Tenenbaum"
> > To: "Leonardo
- Original Message -
> From: "Dan Tenenbaum"
> To: "Leonardo Collado Torres"
> Cc: bioc-devel@r-project.org
> Sent: Friday, April 17, 2015 12:47:18 PM
> Subject: Re: [Bioc-devel] R 3.3 for snow leopard
>
>
>
> - Original Message -
> > From: "Leonardo Collado Torres"
> > To:
On 04/17/2015 09:12 AM, Martin Morgan wrote:
On 04/17/2015 08:59 AM, Leonard Goldstein wrote:
Hi all,
I ran into a segfault error when trying to read paired-end RNA-seq
alignments with scanBam (see below). This seems to be a problem
introduced in Rsamtools version 1.19.35 (1.19.34 works fine).
