On Apr 16, 2015 9:44 PM, "Dan Tenenbaum" wrote:
>
>
>
> - Original Message -
> > From: "Henrik Bengtsson"
> > To: "Dan Tenenbaum"
> > Cc: "bioc-devel"
> > Sent: Thursday, April 16, 2015 6:57:45 PM
> > Subject: Re: [Bioc-devel] BioC 3.1 branch created
> >
> > On Thu, Apr 16, 2015 at 1:23
On 04/16/2015 04:57 PM, Steve Lianoglou wrote:
Howdy,
It was recently brought to my attention that there is a new "h"
collection in MSigDB v5.0:
http://www.broadinstitute.org/gsea/msigdb/genesets.jsp?collection=H
Here's a diff against RELEASE that I think should do the trick. There
are some sp
- Original Message -
> From: "Henrik Bengtsson"
> To: "Dan Tenenbaum"
> Cc: "bioc-devel"
> Sent: Thursday, April 16, 2015 6:57:45 PM
> Subject: Re: [Bioc-devel] BioC 3.1 branch created
>
> On Thu, Apr 16, 2015 at 1:23 PM, Dan Tenenbaum
> wrote:
> > The BioC 3.1 branch is now ready.
>
On Thu, Apr 16, 2015 at 1:23 PM, Dan Tenenbaum wrote:
> The BioC 3.1 branch is now ready.
>
> Remember, you always have access to 2 versions of your package:
> the "release" and the "devel" versions.
>
> Right now the "release" version of your package (which is not
> officially released yet but wi
Howdy,
It was recently brought to my attention that there is a new "h"
collection in MSigDB v5.0:
http://www.broadinstitute.org/gsea/msigdb/genesets.jsp?collection=H
Here's a diff against RELEASE that I think should do the trick. There
are some spurious +/- entries here because (I think) my edit
Hi Johannes,
I have updated the GRanges for all the GTF files.
> library(AnnotationHub)
> hubCache(ah)
[1] "/home/sarora/.AnnotationHub" ## delete everything from this folder
> ah = AnnotationHub()
retrieving 1 resources
|==|
The BioC 3.1 branch is now ready.
Remember, you always have access to 2 versions of your package:
the "release" and the "devel" versions.
Right now the "release" version of your package (which is not
officially released yet but will be tomorrow if
everything goes well) is in the 3.1 branch and ac
Hello BioC developers,
We will be creating the Bioconductor 3.1 branch today at 12:30 PM
Seattle time. (19:30 UTC). This is about an hour from now.
Please stop all commits to trunk before 12:30PM and do not resume until
further notice.
We will send another email when it is OK to resume commits.
