So I went ahead and did BSgenome.Btaurus.UCSC.bosTau8. It should
become available via biocLite() in the next couple of hours (in
BioC devel only).
H.
On 03/26/2015 12:54 AM, Hervé Pagès wrote:
Hi Byungkuk,
On 03/25/2015 10:17 PM, Byungkuk Min wrote:
Dear Dr.Pages,
I've been trying to build a
That did it, sorry for whining too early :-\
Nico
---
Nicolas Delhomme
The Street Lab
Department of Plant Physiology
Umeå Plant Science Center
Tel: +46 90 786 5478
Email: nicolas.delho...@umu.se
SLU - Umeå universitet
Umeå S-901 87 Swe
Try updating to R-alpha (3.2.0) instead of R-devel (3.3.0).
Dan
- Original Message -
> From: "Nicolas Delhomme"
> To: "Dan Tenenbaum"
> Cc: "bioC-devel"
> Sent: Friday, March 27, 2015 11:12:00 AM
> Subject: Re: [Bioc-devel] "forceAndCall" is not a SPECIAL function ERROR when
> using S
Easy enough :-)
I'm running the RnaSeqTutorial package vignette and the chunks 6, 7 and 8 fail
with that forceAndCall error.
My R-devel is rather outdated, I'm updating it to see if that is the reason
(2015-02-11).
Nico
---
Nicolas
I think we'd need to see your files in order to try to reproduce this.
Dan
- Original Message -
> From: "Nicolas Delhomme"
> To: "bioC-devel"
> Sent: Friday, March 27, 2015 11:04:17 AM
> Subject: [Bioc-devel] "forceAndCall" is not a SPECIAL function ERROR when
> using ShortRead readAli
Hej Bioc!
I've got the following error and can't really track its origin.
Cheers,
Nico
> aln2 <- readAligned(getwd(),pattern="subset.bam$",type="BAM")
Error: Input/Output
'readAligned' failed to parse files
dirPath: '/Users/delhomme/Documents/Git/RnaSeqTutorial'
pattern: 'subset.bam$'
