Re: [Bioc-devel] Importing classes into NAMESPACE

2015-02-26 Thread Hervé Pagès
Hi Karolis, On 02/25/2015 09:02 AM, Karolis Uziela wrote: Thank you for your help everyone! Importing constructors separately (as Thomas suggested), has solved the problem. @Gabe: I am not using any methods from Biobase, GenomicRanges and S4Vectors. I am only using their constructors. Does it m

Re: [Bioc-devel] show method for CompressedVRangesList-class

2015-02-26 Thread Robert Castelo
great, thanks!! robert. On 02/25/2015 10:06 PM, Michael Lawrence wrote: I checked in a fix for the splitting to CompressedVRangesList. The slowness of creating a SimpleVRangesList is due to the cost of extracting a VRanges for each sample. Depending your exact use case, it might be better to pa