Hi Karolis,
Please use the bioc-devel mailing list (to which you should
be subscribed) to ask this type of question.
If you manually run the example in your package (using BioC devel,
which requires R-3.2), you'll get:
> prebs_values <- calc_prebs(bam_files, manufacturer_cdf_mapping)
Inferr
-- Forwarded message --
From: "Karolis Uziela"
Date: Feb 19, 2015 9:22 AM
Subject: readGAlignmentsFromBam function
To: "Michael Lawrence"
Cc: "bioconduc...@r-project.org"
Hi,
I have looked at R check results for the devel version of Bioconductor and
I noticed that the package I
Hi Valerie, hi Michael,
I find myself frequently moving back and forth between data.frames, GRanges
and VRanges objects.
The makeGRangesFromDataFrame function from the GenomicRanges makes the
coercion between the former straightforward, but I couldn't find anything
similar for the second step, co
Hi Dario,
This isn't the right forum for your question (this listserv is for
development of packages, not questions about existing packages), so you
should ask on the support site.
Best,
Jim
On Thu, Feb 19, 2015 at 1:00 AM, Dario Strbenac
wrote:
> library(GEOquery)
> gastricChina <- getGEO(
On 02/18/2015 07:50 PM, Hervé Pagès wrote:
I've not done this in a systematic way yet but this is the long
term plan. In the mean time, I just did it for the "precede", "follow",
"nearest", "distance", and "distanceToNearest" in GenomicRanges.
This is in GenomicRanges 1.19.38 (BioC devel). More
