Re: [Bioc-devel] Error in citation info for SPAN.UPC

2015-02-06 Thread Dan Tenenbaum
- Original Message - > From: "Dan Tenenbaum" > To: "Ryan" > Cc: "bioC-devel" , "stephen piccolo" > > Sent: Friday, February 6, 2015 10:13:16 AM > Subject: Re: [Bioc-devel] Error in citation info for SPAN.UPC > > > > - Original Message - > > From: "Dan Tenenbaum" > > To: "R

Re: [Bioc-devel] Error in citation info for SPAN.UPC

2015-02-06 Thread Dan Tenenbaum
- Original Message - > From: "Dan Tenenbaum" > To: "Ryan" > Cc: "bioC-devel" , "stephen piccolo" > > Sent: Friday, February 6, 2015 10:06:40 AM > Subject: Re: [Bioc-devel] Error in citation info for SPAN.UPC > > > > - Original Message - > > From: "Ryan" > > To: "stephen pi

Re: [Bioc-devel] Error in citation info for SPAN.UPC

2015-02-06 Thread Dan Tenenbaum
- Original Message - > From: "Ryan" > To: "stephen piccolo" > Cc: "bioC-devel" > Sent: Friday, February 6, 2015 9:37:24 AM > Subject: [Bioc-devel] Error in citation info for SPAN.UPC > > Hi Stephen, > > I noticed that there's a mistake in the citation info for SCAN.UPC, > as > seen h

[Bioc-devel] Error in citation info for SPAN.UPC

2015-02-06 Thread Ryan
Hi Stephen, I noticed that there's a mistake in the citation info for SCAN.UPC, as seen here: http://www.bioconductor.org/packages/release/bioc/html/SCAN.UPC.html Specifically, the URLs for the citations are broken because " http://dx.doi.org/"; is repeated twice. I'm guessing the system auto

[Bioc-devel] Masked version of BSgenome.Hsapiens.NCBI.GRCh38?

2015-02-06 Thread Ulrich Bodenhofer
Hi, The latest human genome build GRCh38 has been around in Bioconductor for some while (package BSgenome.Hsapiens.NCBI.GRCh38). As far as I can tell, however, there is currently no package that provides easy access to masked/unmasked regions in the genome (like there is a .masked version tha