Re: [Bioc-devel] Package submission with library requirement

2015-01-30 Thread Marc Carlson
Hi Avinash, So the argument for the importance of reproducible research *definitely* resonates with us here as it is a major goal of ours. However while the decision to use the same library as your paper helps to make the immediate work more reproducible, it simultaneously hampers others from

Re: [Bioc-devel] BiocGenerics fails to install from source on R-devel (aka "there is no package called '2015-01-30 09:23:26'")

2015-01-30 Thread Martin Morgan
On 01/30/2015 10:11 AM, Henrik Bengtsson wrote: Thanks for the quick fix. No need to be sorry. /Henrik especially since the cumulative changes in R-devel are starting to make a pretty reasonable difference to load times (and presumably other aspects) of S4-heavy packages! Thanks Michael & Pet

Re: [Bioc-devel] BiocGenerics fails to install from source on R-devel (aka "there is no package called '2015-01-30 09:23:26'")

2015-01-30 Thread Henrik Bengtsson
Thanks for the quick fix. No need to be sorry. /Henrik On Fri, Jan 30, 2015 at 9:36 AM, Michael Lawrence wrote: > Just checked in the fix to R-devel. No more error, and the warning is also > fixed. > > Sorry, > Michael > > On Fri, Jan 30, 2015 at 9:29 AM, Henrik Bengtsson > wrote: >> >> I'm post

Re: [Bioc-devel] BiocGenerics fails to install from source on R-devel (aka "there is no package called '2015-01-30 09:23:26'")

2015-01-30 Thread Michael Lawrence
Just checked in the fix to R-devel. No more error, and the warning is also fixed. Sorry, Michael On Fri, Jan 30, 2015 at 9:29 AM, Henrik Bengtsson wrote: > I'm posting to bioc-devel, but I suspect it would end up on R-devel. > Feel free to continue the thread there at any time. > > > PROBLEM: >

[Bioc-devel] BiocGenerics fails to install from source on R-devel (aka "there is no package called '2015-01-30 09:23:26'")

2015-01-30 Thread Henrik Bengtsson
I'm posting to bioc-devel, but I suspect it would end up on R-devel. Feel free to continue the thread there at any time. PROBLEM: $ Rscript --vanilla -e "source('http://bioconductor.org/biocLite.R');biocLite('BiocGenerics', type='source')" Bioconductor version 3.1 (BiocInstaller 1.17.5), ?biocLi