Re: [Bioc-devel] ClassifyR Fails to Build on Windows

2015-01-16 Thread Martin Morgan
On 01/16/2015 03:00 PM, Dario Strbenac wrote: Thank you for the detailed explanation. I understand the cause now. Actually, the exact problem is that, in runTest, I have a condition that depends on the previous function calls : if(any(grepl("runTests", deparse(sys.calls() If runTest was

Re: [Bioc-devel] ClassifyR Fails to Build on Windows

2015-01-16 Thread Dario Strbenac
Thank you for the detailed explanation. I understand the cause now. Actually, the exact problem is that, in runTest, I have a condition that depends on the previous function calls : if(any(grepl("runTests", deparse(sys.calls() If runTest was called by runTests, then I intend to return a pa

Re: [Bioc-devel] BiocCheck examples error when using imported package functions

2015-01-16 Thread Glyn Bradley
Hi Please disregard this thread, I've realised it's an error with our code Thanks Glyn From: Glyn Bradley Sent: 16 January 2015 15:32 To: 'bioc-devel@r-project.org' Subject: BiocCheck examples error when using imported package functions Hi, Our package uses igraph. We have imports: igraph i

[Bioc-devel] BiocCheck examples error when using imported package functions

2015-01-16 Thread Glyn Bradley
Hi, Our package uses igraph. We have imports: igraph in the DESCRIPTION file and import(igraph)in the NAMESPACE But when we try to write examples for our functions that use igraph functions to create then use igraph objects from our input, BiocCheck fails on them. How can we use igraph in our exa