Hi Julian,
many thanks for the kind explanation it was very useful.
I will use your suggestion also because I am working only with
toplevel chromosomes.
Cheers
Raf
>Hi Raffaele,
>Ignore my last post completely, it was overly optimistic:
>The 'BSgenome.Hsapiens.NCBI.GRCh38' package contains t
- Original Message -
> From: "Dan Tenenbaum"
> To: "Kevin Rue-Albrecht"
> Cc: bioc-devel@r-project.org
> Sent: Wednesday, December 3, 2014 7:49:10 AM
> Subject: Re: [Bioc-devel] RSS package feeds not updated
>
>
>
> - Original Message -
> > From: "Kevin Rue-Albrecht"
> > To:
Dear Joachim,
thank you for reporting the issue with using EBImage in your package!
Martin, Dan: many thanks for digging into the problem and for suggesting
solutions to overcome it.
I had a look into this as well and could reproduce the issue. I can also
confirm that it occurs under R 3.1.2 rel
Looks like an issue when expand()ing the VCF. Maybe Val could take a look?
On Wed, Dec 3, 2014 at 7:39 AM, Julian Gehring
wrote:
> Hi,
>
> The conversion from a 'VCF' to 'VRanges' object fails if an INFO field
> with multiple values for different ALT alleles is present:
>
> Here an example VCF e
- Original Message -
> From: "Kevin Rue-Albrecht"
> To: "Stephanie M. Gogarten"
> Cc: bioc-devel@r-project.org, "Dan Tenenbaum"
> Sent: Wednesday, December 3, 2014 3:09:58 AM
> Subject: Re: [Bioc-devel] RSS package feeds not updated
>
>
>
>
> Hi Stephanie,
>
> I am using rss2email
Hi,
The conversion from a 'VCF' to 'VRanges' object fails if an INFO field
with multiple values for different ALT alleles is present:
Here an example VCF entry for which this fails (line 71151250 in
'ALL.wgs.phase3_shapeit2_mvncall_integrated_v5.20130502.sites.vcf.gz'
, taken from
ftp://ftp.1000g
Hi Stephanie,
I am using rss2email (
http://www.allthingsrss.com/rss2email/getting-started-with-rss2email/), a
script that I installed to track my package feed, and that is run by my
Windows task scheduler every day, to send me the RSS news in an email (not
as an RSS feed per se)
Now, just like y
