Re: [Bioc-devel] Can't seem to use useDevel(); biocLite() for BioC 3.1

That might well be. I can't recall doing anything special, but I'll try to uninstall BiocInstaller the next time I run into a similar issue to test this. Florian On 05/11/14 18:02, "Dan Tenenbaum" wrote: >Taking a closer look at your email... > >> - Original Message - >> > From: "Floria

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

agreed on Rocker and it gives me an excuse to bug Dirk. Errr, I mean, test it Statistics is the grammar of science. Karl Pearson On Mon, Nov 10, 2014 at 10:04 AM, Dan Tenenbaum wrote: > > > - Original Message - > > From: "Laurent G

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

- Original Message - > From: "Laurent Gautier" > To: "Martin Morgan" > Cc: bioc-devel@r-project.org, "Dan Tenenbaum" > Sent: Monday, November 10, 2014 9:57:00 AM > Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for > continuous integration) > > > > They would work

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

They would work in the context of well defined system such as the VM used by popular continuous integration providers (Travis or Drone for example). Then it would be easy as having the binaries built as artifacts by continuous integration and made available to other continuous integration processe

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

On Mon, Nov 10, 2014 at 12:19 PM, Martin Morgan wrote: > On 11/09/2014 11:06 AM, Dan Tenenbaum wrote: > >> >> >> - Original Message - >> >>> From: "Martin Morgan" >>> To: "Laurent Gautier" , bioc-devel@r-project.org >>> Sent: Sunday, November 9, 2014 8:26:48 AM >>> Subject: Re: [Bioc-dev

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

On 11/09/2014 11:06 AM, Dan Tenenbaum wrote: - Original Message - From: "Martin Morgan" To: "Laurent Gautier" , bioc-devel@r-project.org Sent: Sunday, November 9, 2014 8:26:48 AM Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration) On 11/09/201

Re: [Bioc-devel] Error when creating git-svn bridge

- Original Message - > From: "Peter Humburg" > To: bioc-devel@r-project.org > Sent: Monday, November 10, 2014 2:00:12 AM > Subject: [Bioc-devel] Error when creating git-svn bridge > > Hi, > > I'm trying to create git-svn bridges for my Bioconductor packages but > get > the following er

Re: [Bioc-devel] bioc pkgs depending on packages that are only in github?

Hey all, A package manifest is essentially a decentralized PACKAGES file (this is what defines what is in a package repository, for those who don't know). As Michael pointed out, manifests can point to remote or local files (e.g. those in an actual repository or the CRAN Archive), but it also unde

Re: [Bioc-devel] Changes to Hits class in devel branch affecting distanceToNearest method

Thanks, Val and Herve. On 08/11/2014, at 8:47 AM, Valerie Obenchain wrote: > These issues are fixed in IRanges 2.1.8 and GenomicRanges 1.19.5. > > Valerie > > > On 11/05/14 18:32, Herv� Pag�s wrote: >> Hi Peter, >> >> The new validity method for Hits revealed some issues with >> the behavior

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

On Nov 9, 2014 8:06 PM, "Dan Tenenbaum" wrote: > > > > - Original Message - > > From: "Martin Morgan" > > To: "Laurent Gautier" , bioc-devel@r-project.org > > Sent: Sunday, November 9, 2014 8:26:48 AM > > Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integ

[Bioc-devel] Error when creating git-svn bridge

Hi, I'm trying to create git-svn bridges for my Bioconductor packages but get the following error: "An error occurred creating the git-svn bridge." Any idea what the problem might be? Cheers, Peter [[alternative HTML version deleted]] ___ Bioc