Re: [Bioc-devel] [devteam-bioc] A more flexible GenomeInfoDb::mapSeqlevels(): used supported info but don't break with new organisms/toy examples

2014-10-22 Thread Leonardo Collado Torres
On Wed, Oct 22, 2014 at 6:59 PM, Leonardo Collado Torres wrote: > Hi Sonali, > > The recent changes in GenomeInfoDb (1.3.3) look great! > > > > On Wed, Oct 22, 2014 at 1:53 PM, Sonali Arora wrote: >> >> Hi Leo, >> >> To summarize, These are the concerns raised in your previous email : >> >> a) ma

Re: [Bioc-devel] [devteam-bioc] A more flexible GenomeInfoDb::mapSeqlevels(): used supported info but don't break with new organisms/toy examples

2014-10-22 Thread Leonardo Collado Torres
Hi Sonali, The recent changes in GenomeInfoDb (1.3.3) look great! On Wed, Oct 22, 2014 at 1:53 PM, Sonali Arora wrote: > > Hi Leo, > > To summarize, These are the concerns raised in your previous email : > > a) mapSeqlevels() should return current style along with other mapped styles? > look a

[Bioc-devel] check warning of QUALIFIER package

2014-10-22 Thread Mike
Hi, I am not able to find the cause of the following warning message Warning: no function found corresponding to methods exports from ‘flowWorkspace’ for: ‘sampleNames<-’ First of all, replacement method 'sampleNames<-' does not seem to be used by `QUALIFIER` anywhere. Secondly, adding 'impo

Re: [Bioc-devel] [devteam-bioc] A more flexible GenomeInfoDb::mapSeqlevels(): used supported info but don't break with new organisms/toy examples

2014-10-22 Thread Sonali Arora
Hi Leo, To summarize, These are the concerns raised in your previous email : *a) mapSeqlevels() should return current style along with other mapped styles? ** look at extendedMapSeqlevels() *I am looking into this. I have a few thoughts/ questions for you. The main idea of mapSeqlevels() is to

Re: [Bioc-devel] [devteam-bioc] Whom to contact for adding an organism to GenomeInfoDb?

2014-10-22 Thread Leonardo Collado Torres
Roger. I have relayed this info to the person interested in submitting the information for Canis familiaris. Cheers, Leo On Wed, Oct 22, 2014 at 12:10 PM, Sonali Arora wrote: > Hi Leo, > > You can contact me for adding a specific organism to GenomeInfoDb. > I'll talk with the team and update th

Re: [Bioc-devel] [devteam-bioc] Whom to contact for adding an organism to GenomeInfoDb?

2014-10-22 Thread Sonali Arora
Hi Leo, You can contact me for adding a specific organism to GenomeInfoDb. I'll talk with the team and update the vignette. Thanks Sonali. On 10/21/2014 8:53 PM, Maintainer wrote: Hello, As you can see in https://support.bioconductor.org/p/62136/#62180 the GenomeInfoDb vignette for adding an

Re: [Bioc-devel] Cant sign up on support site!

2014-10-22 Thread Dan Tenenbaum
- Original Message - > From: "Felix Klein" > To: bioc-devel@r-project.org > Sent: Wednesday, October 22, 2014 4:02:09 AM > Subject: [Bioc-devel] Cant sign up on support site! > > Hello, > > somehow I cannot sign up on the support site by entering a new email > address and password. >

[Bioc-devel] Cant sign up on support site!

2014-10-22 Thread Felix Klein
Hello, somehow I cannot sign up on the support site by entering a new email address and password. Is there a specific way to do this? Or do you need one account of the quick login providers? Best regards, Felix -- PhD student Huber Group - Genome Biology Unit European Molecular Biology La