Re: [Bioc-devel] warning when merging disjoint sets of seqlevels

2014-10-12 Thread Hervé Pagès
Hi Michael, On 10/12/2014 02:02 PM, Michael Lawrence wrote: This recently became a warning, and I am not sure why. Yes, in the overlap case, that might be something to worry about. But a perfectly reasonable use case of merge,Seqinfo is to merge two disjoint sets of seqlevels. Now we're forced t

[Bioc-devel] warning when merging disjoint sets of seqlevels

2014-10-12 Thread Michael Lawrence
This recently became a warning, and I am not sure why. Yes, in the overlap case, that might be something to worry about. But a perfectly reasonable use case of merge,Seqinfo is to merge two disjoint sets of seqlevels. Now we're forced to use suppressWarnings() for that. Michael [[alternat

Re: [Bioc-devel] Non-ASCII in datase from Biomart EMBL via Gviz package

2014-10-12 Thread Vincent Carey
I don't know exactly how you are triggering this warning. If you have the ability to prefilter your content before serializing, that may be best. The following is from the gwascat package. You have very little chance, I believe, of getting an institutional guarantee that only ascii will go into t

[Bioc-devel] Non-ASCII in datase from Biomart EMBL via Gviz package

2014-10-12 Thread Martin, Tiphaine
Hi, I need to create dataset BiomartGeneRegionTrack via Gviz package to run examples in my packages. But when I run "R CMD check coMET", i have warning message for the checking : checking data for non-ASCII characters ... WARNING Warning: found non-ASCII strings '[alpha cell,acidophil ce