On Sat, Oct 11, 2014 at 5:17 PM, Michael Lawrence wrote:
> But what it would do exactly?
>
> Probably would want to be able to extract a gene list from a TxDb, then
> extract the desired type of structure from the TxDb.
>
> Not too bad right now, but it would be nice to leverage the identifier
>
But what it would do exactly?
Probably would want to be able to extract a gene list from a TxDb, then
extract the desired type of structure from the TxDb.
Not too bad right now, but it would be nice to leverage the identifier type
information on the gene list object.
Currently:
tx <- transcripts
On 10/11/2014 08:41 AM, Vincent Carey wrote:
Is there anything on the order of as([GeneSet], "GRanges") around?
no, I don't think so; obviously of use and following a common theme. Martin
On Sat, Sep 20, 2014 at 11:34 PM, Gabe Becker wrote:
Sean and Vincent,
The goal of what we are doing
Is there anything on the order of as([GeneSet], "GRanges") around?
On Sat, Sep 20, 2014 at 11:34 PM, Gabe Becker wrote:
> Sean and Vincent,
>
> The goal of what we are doing builds off of what Martin has in GSEABase.
> We were looking to see how much benefit we can get with something
> lighter-w
