Hi Yinming,
First - Like any package that gets added to Bioconductor, FEM
is first added to the *devel* version of BioC, which happens to
be BioC 3.0. To install and use packages from BioC 3.0, you need
to run R 3.1.*. That's because BioC 3.0 (including the FEM
package) was designed and tested to
- Original Message -
> From: "Yinming Jiao" <20907...@zju.edu.cn>
> To: bioc-devel@r-project.org
> Sent: Thursday, October 9, 2014 7:46:38 PM
> Subject: [Bioc-devel] package ‘FEM’ is not available (for R version 3.0.2)
>
>
> Dear All,
>
>
> I have a package, FEM, which is published fe
Dear All,
I have a package, FEM, which is published few days ago.
The link is :http://www.bioconductor.org/packages/devel/bioc/html/FEM.html
But when I try to install it,
source("http://bioconductor.org/biocLite.R";)
biocLite("FEM")
R reports: package ��FEM�� is not available
Hi Vince,
Good idea. I made that change in GenomeInfoDb 1.1.26:
library(GenomeInfoDb)
x <- Seqinfo(seqnames=c("chr1", "chr2", "chr3", "chrM"),
seqlengths=c(100, 200, NA, 15),
isCircular=c(NA, FALSE, FALSE, TRUE),
genome="toy")
y <- Seqinfo(seqn
Hi Robert, Martin,
Yes using requireNamespace() internally is much cleaner than using
require(). Sorry for that. Just made the change in S4Vectors 0.2.6.
FYI the need to load IRanges namespace in a couple of places
inside S4Vectors is temporary and will go away soon.
Cheers,
H.
On 10/09/2014 09
*Warning message:*
*In .Seqinfo.mergexy(x, y) :*
* Each of the 2 combined objects has sequence levels not in the other:*
* - in 'x': chr4, chr16, chr10, chr11, chr18, chr20, chr22*
* - in 'y': chrY*
* Make sure to always combine/compare objects based on the same reference*
* genome (use
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On 10/09/2014 08:00 AM, Robert Castelo wrote:
hi Martin,
thanks for your recommendations regarding the conditional loading of packages. I
think however, that they are not related to the problem I'm referring. Let me
put here a reproducible example which works with qpgraph version 0.99.7 that I
h
hi Martin,
thanks for your recommendations regarding the conditional loading of
packages. I think however, that they are not related to the problem I'm
referring. Let me put here a reproducible example which works with
qpgraph version 0.99.7 that I have just pushed to svn:
library(qtl)
libra
On Wed, Oct 8, 2014 at 12:20 PM, Martin Morgan wrote:
> On 10/08/2014 11:41 AM, Henrik Bengtsson wrote:
>>
>> You may want to make those function local to latex(). I haven't
>> verified it works (won't have time), but I bet a beer that it will
>> work.
>
>
> I'll take you up on the bet, at least
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