Thanks for the clarification. Isn't there a way via active bindings to
preserve the
interfaces conferred by e.g., illuminaHumanv1CHRLOC, so that queries to the
object (no longer a Bimap) succeed with the endorsed metadata? the chipDb
packages would be revised to use a new protocol for these queri
Hi Vince,
So if you wanted to do this manually, then the thing you would want to
do is to get a gene ID from the probe and to take that to a TranscriptDb
object (again: that is if you wanted to do it manually). Alternatively,
if you had an OrganismDb object then this association would be hand
You need to use \link[package:MyClass-class]{MyClass}.
On Mon, Sep 22, 2014 at 5:00 PM, Dario Strbenac
wrote:
> I have a sentence of documentation that is written as :
>
> A list of trained models of class \code{\linkS4class{MixmodCluster}}.
>
> However, the package Rmixmod is in Suggests. Ther
I have a sentence of documentation that is written as :
A list of trained models of class \code{\linkS4class{MixmodCluster}}.
However, the package Rmixmod is in Suggests. There is no [package] option for
\linkS4class, unlike for \link. What's the correct way to implement this ?
I also found a p
On Sun, Sep 21, 2014 at 1:35 PM, Dan Tenenbaum wrote:
>
>
> On September 21, 2014 1:07:29 PM PDT, Henrik Bengtsson
> wrote:
>>A few questions about the Bioconductor Git-SVN bridge:
>>
>>Q1. Is it safe to add, delete, add, delete, add, ... a bridge over and
>>over for the same package and GitHub
Hi Thomas,
Just wanted to let you know I saw this and am looking into it.
Valerie
On 09/20/2014 02:54 PM, Thomas Girke wrote:
Hi Martin, Micheal and Vincent,
If I run the following code, with the release version of BiocParallel then it
works (took me some time to actually realize that), but w
On Mon, Sep 22, 2014 at 10:17 AM, Cook, Malcolm wrote:
> Hi,
>
> >
> https://github.com/vjcitn/biocMultiAssay/blob/master/vignettes/SEresolver.Rnw
> >
> >shows some modifications to [ that allow subsetting of SE by
> >gene or pathway name
>
> Without reading the code, do you intend that SE[i,j
Hi,
>https://github.com/vjcitn/biocMultiAssay/blob/master/vignettes/SEresolver.Rnw
>
>shows some modifications to [ that allow subsetting of SE by
>gene or pathway name
Without reading the code, do you intend that SE[i,j] will , if i is provided
as vector of string, will subset those rows wh
