Ah, ok. I should have 'svn up' and re-tried 'R CMD check' before
reporting this. Thanks and sorry for the noise.
H.
On 09/09/2014 03:09 PM, Valerie Obenchain wrote:
Hi Herve,
This unit test passes in VA 1.11.30 (the current version in svn). It was
related to writeVcf(), not the IRanges/S4Vecto
Hi Herve,
This unit test passes in VA 1.11.30 (the current version in svn). It was
related to writeVcf(), not the IRanges/S4Vector stuff. My fault, not yours.
Val
On 09/09/2014 02:47 PM, Hervé Pagès wrote:
Hi Val,
On 09/09/2014 02:12 PM, Valerie Obenchain wrote:
Writing 'list' data has bee
Hi Val,
On 09/09/2014 02:12 PM, Valerie Obenchain wrote:
Writing 'list' data has been fixed in 1.11.30. fyi, Herve is in the
process of moving SimpleList and DataFrame from IRanges to S4Vectors;
finished up today I think.
I fixed VariantAnnotation's NAMESPACE this morning but 'R CMD check'
fai
Writing 'list' data has been fixed in 1.11.30. fyi, Herve is in the
process of moving SimpleList and DataFrame from IRanges to S4Vectors;
finished up today I think. Anyhow, if you get VariantAnnotation from svn
you'll need to update S4Vectors, IRanges and GenomicRanges (and maybe
rtracklayer).
OK so let's go for a 1 line summarization of the seqinfo.
Vince is that OK if we keep this at the bottom of the object?
That way it will always be visible, even when the object requires
more than 1 screen to display (e.g. when it has a lot of metadata
cols). Will look something like:
> gr
GRa
Dear Levi,
please note that experiment data packages are now build just twice a week, on
Wednesdays and Saturdays. So no need to worry.
Cheers,
Andrzej
On Tue, Sep 9, 2014 at 5:01 PM, Levi Waldron
wrote:
> I just noticed that the daily build systems are several days behind, eg for
> experimenta
I just noticed that the daily build systems are several days behind, eg for
experimental data packages:
http://www.bioconductor.org/checkResults/3.0/data-experiment-LATEST/
Snapshot Date: 2014-09-06 06:15:22 -0700 (Sat, 06 Sep 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs
Agreed, that looks a lot nicer.
On Tue, Sep 9, 2014 at 4:42 AM, Martin Morgan wrote:
> On 09/09/2014 04:02 AM, Michael Lawrence wrote:
>
>> I'm in favor of this display. The seqinfo output at the bottom has always
>> been annoying (over-emphasized).
>>
>
> the fact that the lengths are 'NA' can
On 09/09/2014 04:02 AM, Michael Lawrence wrote:
I'm in favor of this display. The seqinfo output at the bottom has always
been annoying (over-emphasized).
the fact that the lengths are 'NA' can be a helpful prompt to do something about
it, e.g., add seqinfo when inputting the data. Also they a
I'm in favor of this display. The seqinfo output at the bottom has always
been annoying (over-emphasized).
On Mon, Sep 8, 2014 at 10:08 PM, Vincent Carey
wrote:
>
>
> On Tue, Sep 9, 2014 at 12:30 AM, Hervé Pagès wrote:
>
>> On 09/08/2014 06:42 PM, Michael Lawrence wrote:
>>
>>> Instead of print
10 matches
Mail list logo
