To reproduce, load goseq followed by dplyr and call the "goseq" function.
Example output:
Error in UseMethod("select") :
no applicable method for 'select' applied to an object of class
"c('GODb', 'AnnotationDb', 'envRefClass', '.environment', 'refClass',
'environment', 'refObject', 'AssayData')
Should work in devel, 1.99.20, as long as that object returns two
dimensions from dim(), we proceed through data.frame. Assumption is that 2D
things have an as.data.frame method.
On Sat, Jul 12, 2014 at 9:19 AM, Keith Hughitt
wrote:
> Currently, IRanges does not play well with dplyr dataframes,
Currently, IRanges does not play well with dplyr dataframes, e.g.:
library(IRanges)
library(dplyr)
df = tbl_df(data.frame(
id=c(1,2,3),
group=c('a','b','c')
))
> DataFrame(df)
library(dplyr)
> DataFrame(df)
DataFrame with 2 rows and 1 column
Error in `rownames<-`(`*tmp*`, value = c("id
Hi Jarod
Mike overlooked one point in your question
On 11/07/14 12:05, jarod...@libero.it wrote:
If I interested in the genes that have a foldchange more than 0.5 and 2 I need
to use this comand is it right?
DESeq2 reports al fold changes on a log2 scale. So your limits of 0.5
and 2 for unlo
