[Bioc-devel] GIntervalTree objects are corrupted during save/load

2014-06-30 Thread Kristoffer Vitting-Seerup
Hi bioc-devel I’ve fond an error in the usage of GIntervalTree: > test <- GRanges(seqnames='Chr1', range=IRanges(start=10,end=20)) > test GRanges with 1 range and 0 metadata columns: seqnamesranges strand [1] Chr1 [10, 20] * this object I can save and load with

Re: [Bioc-devel] Seqlengths not set in TxDb.Athaliana.BioMart.plantsmart19

2014-06-30 Thread Hervé Pagès
Hi Vince, On 06/26/2014 11:55 PM, Vince S. Buffalo wrote: I was surprised to see that sequence lengths weren't set in the transcriptDb object TxDb.Athaliana.BioMart.plantsmart19 (I checked TxDb.Athaliana.BioMart.plantsmart21 in devel too, and it had the same issue). This seems like something tha