Hello,
I recently found myself in want of a nearest method that handles
GRangesList objects. Is there any plan to add one? I just want to define
"nearest" for elements of a GRangesList by the shortest distance between
any query range and any subject range. Obviously I can do this by
unlisting
thanks Dan, confirmed, 1.7.2 available as source, after run
biocLite("OrganismDbi", type = "source")
it works now!
On Thu, May 22, 2014 at 3:12 PM, Dan Tenenbaum wrote:
> OrganismDbi 1.7.2 (available via biocLite()) has already fixed this so you
> shouldn't have to change anything.
>
> Dan
>
>
OrganismDbi 1.7.2 (available via biocLite()) has already fixed this so you
shouldn't have to change anything.
Dan
- Original Message -
> From: "Tengfei Yin"
> To: "Leonardo Collado Torres"
> Cc: bioc-devel@r-project.org
> Sent: Thursday, May 22, 2014 12:10:29 PM
> Subject: Re: [Bioc-d
I think it caused by this
importClassesFrom(OrganismDbi, OrganismDb)
when comment out, it has no error, I am working on it right now
On Thu, May 22, 2014 at 2:21 PM, Leonardo Collado Torres wrote:
> Hello,
>
> Currently I'm unable to load ggbio 1.13.6 (BioC-devel) due to some
> namespace issu
Hello,
Currently I'm unable to load ggbio 1.13.6 (BioC-devel) due to some
namespace issues. The basic error is:
Error : object ‘cols’ is not exported by 'namespace:AnnotationDbi'
Error: package or namespace load failed for ‘ggbio’
I'm reporting this because a user reported a similar issue with a
- Original Message -
> From: "Robert Castelo"
> To: "Dan Tenenbaum"
> Cc: bioc-devel@r-project.org
> Sent: Thursday, May 22, 2014 7:47:53 AM
> Subject: Re: [Bioc-devel] bioconductor AMI & shiny app
>
> hi Dan,
>
> On 05/21/2014 10:29 PM, Dan Tenenbaum wrote:
> > Hi Robert,
> >
> > I s
hi Dan,
On 05/21/2014 10:29 PM, Dan Tenenbaum wrote:
Hi Robert,
I started an instance of the BioC 2.14 AMI (is that the one you are
working with?) and updated to the latest shiny server (apologies for
the old one being on there).
yes, that was it.
Looks like by default it listens on port 38
