Ok, sorry to bother you. I'll ask my cluster admin for an update.
On Tue Nov 26 17:24:34 2013, Wei Shi wrote:
Hi Ryan,
It seems you are using a quite old version of Subread. The latest version of
SourceForge Subread is 1.4.2 and the latest version of bioc Rsubread is 1.12.3.
These indexing bu
Hi Ryan,
It seems you are using a quite old version of Subread. The latest version of
SourceForge Subread is 1.4.2 and the latest version of bioc Rsubread is 1.12.3.
These indexing building issues had already been fixed.
Cheers,
Wei
On Nov 27, 2013, at 12:12 PM, Ryan C. Thompson wrote:
> Actu
Actually, scratch that. I just tried running subread-buildindex on a
file with only the 20-ish chromosome sequences, and it didn't give the
message about 5 sections, but it still crashed with "Killed" and
exit code 137.
On Tue 26 Nov 2013 05:01:48 PM PST, Ryan C. Thompson wrote:
Hello,
I
Hello,
I'm trying to test out subjunc for mapping my RNA-seq data to the
cynomolgus monkey genome, but when I try to build the index with
subread-buildindex, I get the error:
"There are too many sections in the chromosome data files (more than
5 sections)."
and then after "Building the
Dear All,
I'd like to let you know about a new package available in devel.
GOTHiC is to identify significant interactions from HiC data. It takes BAM
or Bowtie output alignment files, the genome used for mapping and the
restriction enzyme, and outputs a data frame that contains the interacting
re
