[Bioc-devel] GenomicFeatures LoadDb Path

2013-08-08 Thread Dario Strbenac
It's not documented by ?loadDb, but providing an absolute path doesn't work, and shows an unusual error message. > genes17 <- loadDb("/nb/dario/genes/gencode17.db") Error in loadDb(file, dbType, dbPackage, ...) : error in evaluating the argument 'dbType' in selecting a method for function 'lo

[Bioc-devel] *Ranges paper published

2013-08-08 Thread Michael Lawrence
Dear all, The paper on IRanges, GenomicRanges and GenomicFeatures (Software for Computing and Annotating Genomic Ranges) has been published through PLoS Computational Biology[1]. Please cite the paper whenever basing software on the infrastructure, or making direct use of it data analyses. A big t

Re: [Bioc-devel] new OmicCircos released

2013-08-08 Thread Steve Lianoglou
Hi, Just skimmed through your vignette and wanted to say that this looks really awesome. Thanks for the contribution! I look forward to finding an excuse to have to use it ;-) Cheers, -steve On Thu, Aug 8, 2013 at 9:39 AM, Hu, Ying (NIH/NCI) [E] wrote: > Dear All, > > Bioconductor have recent

[Bioc-devel] new OmicCircos released

2013-08-08 Thread Hu, Ying (NIH/NCI) [E]
Dear All, Bioconductor have recently released a new package OmicCircos about generating high-quality circular maps for omic data. I hope that some of you dealing with Omic-visualization using Circos would find this small/simple package useful: http://www.bioconductor.org/packages/devel/bioc/ht