Re: [Bioc-devel] Boost packaged on rforge

2013-05-01 Thread Steffen Neumann
Hi Vincent, BH currently works the way that the package sources (and that includes BH/inst/include/boost/*) are automagically created by bcp'ing the dependencies of *some* R packages (e.g. bigmemory on rforge). John and Dirk et al said that people can ask for additional dependencies on the tr

Re: [Bioc-devel] Boost packaged on rforge

2013-05-01 Thread Steve Lianoglou
Hi, On Wed, May 1, 2013 at 7:47 PM, Vincent Carey wrote: > are the headers for the "boost graph library" purposely excluded? i do not > see them in BH/include They purposely only include parts of boost. From what I understand, what is included is need driven ... there is some discussion of it o

Re: [Bioc-devel] Boost packaged on rforge

2013-05-01 Thread Vincent Carey
are the headers for the "boost graph library" purposely excluded? i do not see them in BH/include On Wed, May 1, 2013 at 6:19 PM, Steffen Neumann wrote: > Hi BioC world, > > I'd like to draw the attention to the boostheaders (or BH) > package on rforge.org [1], which packages the boost headers >

[Bioc-devel] Boost packaged on rforge

2013-05-01 Thread Steffen Neumann
Hi BioC world, I'd like to draw the attention to the boostheaders (or BH) package on rforge.org [1], which packages the boost headers so that other packages can link/include them. I know a few packages on BioC are using -- and embedding -- boost. There have also been some discussion a long time

Re: [Bioc-devel] Extracting mzR compatible acquisition number from mzIdentML files

2013-05-01 Thread Laurent Gatto
Dear Thomas, On 1 May 2013 13:43, Thomas Dybdal Pedersen wrote: > Hi > > I'm in the final stage of preparing an mzIdentML parser for submission to > Bioconductor (https://github.com/thomasp85/mzID) The parser is intended to be > quite sparse and not interpret the content of the mzIdentML file t

[Bioc-devel] Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 28-29 May, Seattle

2013-05-01 Thread Martin Morgan
Bioconductors! Please join us for an intermediate course on use of R / Bioconductor for high-throughput sequence analysis, a brief outline of which is below. More Information: https://secure.bioconductor.org/Seattle-May-2013/ Intermediate R / Bioconductor for High-Throughput Sequence Analysis

Re: [Bioc-devel] Extracting mzR compatible acquisition number from mzIdentML files

2013-05-01 Thread Steffen Neumann
Hi, On Wed, 2013-05-01 at 14:43 +0200, Thomas Dybdal Pedersen wrote: ... > I'm in the final stage of preparing an mzIdentML parser for submission > to Bioconductor (https://github.com/thomasp85/mzID) The parser is > intended to be quite sparse and not interpret the content of the > mzIdentML file

[Bioc-devel] Extracting mzR compatible acquisition number from mzIdentML files

2013-05-01 Thread Thomas Dybdal Pedersen
Hi I'm in the final stage of preparing an mzIdentML parser for submission to Bioconductor (https://github.com/thomasp85/mzID) The parser is intended to be quite sparse and not interpret the content of the mzIdentML file that much. One feature I would like to include though, is that each scan ge