Bioconductors,
The Bioc 2013 conference is taking shape with additional sponsors, speakers, and
activities. The conference web site is at
https://secure.bioconductor.org/BioC2013/
One change is a revised deadline for travel scholarships, now June 10.
See you in Seattle!
Martin
--
Computat
Hi Vince, Kasper,
cc'ing Herve and Marc.
I think we have a couple of things going on so I wanted to clarify. The
'genome' argument to readVcf() is assigned to the GRanges in rowData
with the "genome<-" setter. This is where .normargGenome() gets called.
setReplaceMethod("genome", "Seqinfo",
An "official" comment on this
http://genome.ucsc.edu/cgi-bin/hgGateway?db=hg19
with some more info in this discussion
https://groups.google.com/a/soe.ucsc.edu/forum/?fromgroups=#!topic/genome/hFp-dGG9gBs
Essentially it seems the b37 has been "patched" and this patched release is
not reflected i
I agree with Vincent. I have seen code from Herve in a package with some
standardization of chromosome names, and this code could perhaps be used
more widely so we don't have all the problems with chr1 vs chr01 vs 1.
However, in this particular case, if Ulrich is actually interested in the
mitoch
I am falling behind. I wanted to have a prototype of the following but I
won't do it for a while.
We need to make it more convenient to get the right seqinfo metadata in
place for a wide variety of artifacts.
i propose that there has to be a softer landing for unmet expectations, and
some "intel