Re: [Bioc-devel] Warning in .simpleDuplicateClass(def, prev)

2013-03-18 Thread Dan Tenenbaum
On Mon, Mar 18, 2013 at 5:39 AM, Stefanie Tauber wrote: > Hi, > > I am currently working on new BioC package. > R CMD build, check and INSTALL are successfully passed. > I just always get the following warning (when installing the package): > > Warning in .simpleDuplicateClass(def, prev) : > the

Re: [Bioc-devel] request: timings

2013-03-18 Thread Dan Tenenbaum
On Sat, Mar 16, 2013 at 9:21 PM, Kasper Daniel Hansen wrote: > Is it possible to get _R_CHECK_TIMINGS_=0 set in the build system when > R CMD check is being run? Not super important, but convenient and it > should be easy to add. Done. This will be effective in tomorrow's build report. Dan >

Re: [Bioc-devel] Recent issue with plot method dispatch

2013-03-18 Thread Martin Morgan
On 03/14/2013 07:16 AM, Joern Toedling wrote: Hello, thanks for following up on this, Martin. Indeed the problem was the missing S4 generic for "plot" was the problem. For some reason, the most recent version of R requires to declare this explicitly or to import the generic "plot" from another p

[Bioc-devel] Warning in .simpleDuplicateClass(def, prev)

2013-03-18 Thread Stefanie Tauber
Hi, I am currently working on new BioC package. R CMD build, check and INSTALL are successfully passed. I just always get the following warning (when installing the package): Warning in .simpleDuplicateClass(def, prev) : the specification for S3 class “AsIs” in package ‘RJSONIO’ seems equivalen