Hi,
I have no objection and I am willing to support this generic in the
package codelink. I agree that it is better to wait for the next
release cycle so that we maintainers have enough time to make the
changes.
Thank you,
Diego
On Wed, Feb 20, 2013 at 7:44 AM, Hervé Pagès wrote:
> Hi Laurent,
Hi Laurent, and maintainers of packages with a normalize() function,
On 02/15/2013 04:28 AM, Laurent Gatto wrote:
A quick (and incomplete) manual search using
http://search.bioconductor.jp/ suggest the following usage of
normalize:
As a function:
xps::normalize
codelink::normalize
EBImage::norm
hi Valerie,
thanks a lot for implementing this!!
regarding addNode() i have no specific request or opinion about it.
best regards,
robert.
On 2/19/13 9:44 PM, Valerie Obenchain wrote:
This change is now implemented in devel 1.37.6.
> nms <- paste0("Y", 8:11)
> df <- data.frame(from=nms, to
This change is now implemented in devel 1.37.6.
> nms <- paste0("Y", 8:11)
> df <- data.frame(from=nms, to=nms, weight=rep(1, 4))
Node names are not sorted when full vector of names is provided:
> nodes(graphBAM(df, nodes=c(nms, "foo")))
[1] "Y8" "Y9" "Y10" "Y11" "foo"
Names are sorted when o
Hi Martin,
Thanks a lot for the quick help!
I will get back to you off-list with the ouput and vcf header after trying
what you suggested.
Tengfei
On Tue, Feb 19, 2013 at 1:58 PM, Martin Morgan wrote:
> On 02/19/2013 11:44 AM, Tengfei Yin wrote:
>
>> Hi ,
>>
>> I am working on the vcf files f
On 02/19/2013 11:44 AM, Tengfei Yin wrote:
Hi ,
I am working on the vcf files from GATK pipeline(usually around
400Mb/file), but I encountered some problems importing vcf files in R
using VariantAnnotation package, this has been confirmed in both released
and devel version of VariantAnnotation,
Hi ,
I am working on the vcf files from GATK pipeline(usually around
400Mb/file), but I encountered some problems importing vcf files in R
using VariantAnnotation package, this has been confirmed in both released
and devel version of VariantAnnotation, I only provide sessionInfo for
devel-branch.
