Re: [Bioc-devel] (missing?) UCSCKG -> SYMBOL mappings in Homo.sapiens (etc.)

2013-02-14 Thread Tim Triche, Jr.
Thanks much for sleuthing this out Marc. As much as I respect Jim Kent and David Haussler and the rest of the folks at UCSC, which is to say enormously, sometimes I wonder if it is possible for a relatively small crew to simultaneously maintain an "infrastructure" type of project (I would guess th

Re: [Bioc-devel] SRAdb listSRAfile returns empty datatable with filetype='fastq' (rasko) (SUB#832914)

2013-02-14 Thread Cook, Malcolm
Fix confirmed. Thanks very much. .-Original Message- .From: datas...@ebi.ac.uk [mailto:datas...@ebi.ac.uk] .Sent: Thursday, February 14, 2013 10:04 AM .To: Cook, Malcolm .Cc: bioc-devel@r-project.org; zhuj...@mail.nih.gov .Subject: RE: [Bioc-devel] SRAdb listSRAfile returns empty

Re: [Bioc-devel] SRAdb listSRAfile returns empty datatable with filetype='fastq' (rasko) (SUB#832914)

2013-02-14 Thread Cook, Malcolm
Dear Rasko, Thanks for the quick response and acknowledgement and attempted fix for my issue. I find that the matter is improved as results are returned, but I am now getting a new warning message for each file: 1: In read.table(file = file, header = header, sep = sep, quote = quote,