I'll take a look at this. Until now I was mainly playing around with the
backend part and I don't have a strong opinion on any parallel framework
yet. The parLapply solution seemed the one closest to R's functional
paradigm, but it should be fairy trivial to stick this into something
else, includin
In my work, I've developed a few useful functions relating to edgeR and
DESeq. First, I wrote a version of glmQLFTest that does not throw errors
on zero-count genes. See the comment for details on what exactly it does:
## This version of glmQLFTest excludes genes with zero counts in all
## samp
On 11/19/2012 02:15 AM, Anita Lerch wrote:
Hi,
even if I import IRanges, the error persist.
I've updated ShortRead (in devel, which requires using R-devel) to 1.17.5,
addressing the import problem. This is available via svn now or biocLite
tomorrow (Tuesday) after 10am Seattle time.
I think
Hi,
even if I import IRanges, the error persist.
Anita
On Fri, 2012-11-16 at 13:42 +, Hahne, Florian wrote:
> Hi Anita,
> it seems that FilterRules is defined in the IRanges package. If you want
> to use it you will have to explicitly import it. Can't quite see how this
> is related to import
