Re: saving surrounding text in substitution

Kathryn Bushley schreef: > #!/usr/bin/perl -w > use warnings; Make that: #!/usr/bin/perl use warnings ; use strict ; See `perldoc perllexwarn`. -- Affijn, Ruud "Gewoon is een tijger." -- To unsubscribe, e-mail: [EMAIL PROTECTED] For additional commands, e-mail: [EMAIL PROTECTED]

Re: saving surrounding text in substitution

- Original Message - From: ""John W. Krahn"" <[EMAIL PROTECTED]> Newsgroups: perl.beginners To: "Perl Beginners" Sent: Tuesday, October 10, 2006 4:43 PM Subject: Re: saving surrounding text in substitution Chris Charley wrote: (I've re-wri

Re: saving surrounding text in substitution

Chris Charley wrote: > > (I've re-writteen your entire code below.You how much simpler it could be.) > > #!/usr/bin/perl > use strict; > use warnings; > use Bio::Seq; > use Bio::SeqIO; > > #initialize id and fasta files > my $codefile = $ARGV[0]; > my $treefile = $ARGV[1]; > > #open alignment l

Re: saving surrounding text in substitution

- Original Message - From: "Kathryn Bushley" <[EMAIL PROTECTED]> Newsgroups: perl.beginners To: Sent: Tuesday, October 10, 2006 3:17 PM Subject: saving surrounding text in substitution Hi, I've written the following script to substitute names for codes int

saving surrounding text in substitution

Hi, I've written the following script to substitute names for codes into a phylogenetic tree (newick format-file attached) using a global hash with codes as key and names as values...it seems to be working up to the second to last line where I make the substitution...I am able to make the substitu

Re: saving surrounding text in substitution

On 10/10/06, Kathryn Bushley <[EMAIL PROTECTED]> wrote: s/(.*).$code.(.*)/$1.$id_global{$code}.$2/; I haven't looked at all of your program in detail, so there may be other fixes needed; but this substitution jumped out at me. It doesn't look as if you really need $1 and $2; and it looks as if

saving surrounding text in substitution

Hi, I've written the following script to substitute names for codes into a phylogenetic tree (newick format-file attached) using a global hash with codes as key and names as values...it seems to be working up to the second to last line where I make the substitution...I am able to make the substitu