On 21/10/2011 19:16, Brandon McCaig wrote:
Thanks for the explanation, Rob. :)
use strict;
use warnings;
use v5.010;
my $data = 'aaa bbb ccc';
say $data;
for my $pattern (qw(bbb aaa ccc))
{
say join ' ', pos($data) // 'undef', $pattern,
scalar $data =~ /$pattern/g;
}
__EN
On Fri, Oct 21, 2011 at 1:52 PM, Rob Dixon wrote:
> It is nothing to do with matched patterns overlapping. As I tried to
> describe, it is the designed behaviour of m//g in scalar context to find
> just one match, searching from the end of the previous match if it was
> successful, or restarting f
On 21/10/2011 16:32, Jim Gibson wrote:
>
> I ran the provided program and was going to say that the /g modifier is
> unnecessary. I took it out and noticed that the results differed. I
> believe the difference is that some of the matched patterns overlap, and
> whether or not you want to count
At 11:55 AM +0100 10/21/11, Rob Dixon wrote:
On 21/10/2011 11:31, Nathalie Conte wrote:
HI Rob,
Hello Nat
Please keep your replies to the Perl beginners list, so that other
people can both help and learn from the discussion.
(It would also help if you could bottom-post your replies (put the
Rob Dixon wrote:
On 21/10/2011 00:32, nac wrote:
I have corrected myself a bit, I think the script is now giving me what I
want, having said that, I guess it is not the best way ( even if there is
more than one way), again any pointer are welcome.
many thanks
Nat
#!/usr/bin/perl
use strict;
Rob Dixon wrote:
On 21/10/2011 11:31, Nathalie Conte wrote:
HI Rob,
Hello Nat
Please keep your replies to the Perl beginners list, so that other
people can both help and learn from the discussion.
(It would also help if you could bottom-post your replies (put the
response after the text you
On 21/10/2011 11:31, Nathalie Conte wrote:
HI Rob,
Hello Nat
Please keep your replies to the Perl beginners list, so that other
people can both help and learn from the discussion.
(It would also help if you could bottom-post your replies (put the
response after the text you are quoting). It i
On 21/10/2011 00:32, nac wrote:
> HI again,
> I have corrected myself a bit, I think the script is now giving me what I
> want, having said that, I guess it is not the best way ( even if there is
> more than one way), again any pointer are welcome.
> many thanks
> Nat
Hi Nat
> #!/usr/bin/perl
> u
On 21/10/2011 02:50, John W. Krahn wrote:
nac wrote:
HI again,
Hello,
I have corrected myself a bit, I think the script is now giving me what I
want, having said that, I guess it is not the best way ( even if there is
more than one way), again any pointer are welcome.
many thanks
Nat
#!/usr/
nac wrote:
HI again,
Hello,
I have corrected myself a bit, I think the script is now giving me what I
want, having said that, I guess it is not the best way ( even if there is
more than one way), again any pointer are welcome.
many thanks
Nat
#!/usr/bin/perl
use strict;
use warnings;
my @seq;
On 21/10/2011 00:32, nac wrote:
> HI again,
> I have corrected myself a bit, I think the script is now giving me what I
> want, having said that, I guess it is not the best way ( even if there is
> more than one way), again any pointer are welcome.
> many thanks
> Nat
> #!/usr/bin/perl
> use strict
nac wrote:
HI,
Hello,
I need your wisdom on this parsing script. I have a fastq file,this
contains info for reads ( from nextGen), 1 line starts with a @, second
contain the sequence info from which I want to count pattern, third line
with a sign, fourth with info about the sequence quality (
HI again,
I have corrected myself a bit, I think the script is now giving me what I
want, having said that, I guess it is not the best way ( even if there is
more than one way), again any pointer are welcome.
many thanks
Nat
#!/usr/bin/perl
use strict;
use warnings;
my @seq;
@seq=qw{^TGGCAGTGGAGG
HI,
I need your wisdom on this parsing script. I have a fastq file,this
contains info for reads ( from nextGen), 1 line starts with a @, second
contain the sequence info from which I want to count pattern, third line
with a sign, fourth with info about the sequence quality ( see attached
working e
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