On Fri, Jul 31, 2009 at 10:58, <98447...@student.ucc.ie> wrote:
snip
> [HMU09450], [1084175], [1085500], [ c], [putative thiophene
snip
This shows that your data is not quite what you think it is. This
means one (or more) of the following things:
1. the program that is generating the file has a
98447...@student.ucc.ie wrote:
sample of the outout from
perl -nle 'print join ", ", map { "[$_]" } split
/\t/'datafile
[HMU09420], [1082913], [1083629], [], [putative
1-acyl-SN-glycerol-3-phosphate acyltransferase]
[HMU09430], [1083645], [1083860], [], [Putative hypothetical
protein]
[HMU09440
in, OxaA]
[HMU09480], [1087848], [1088201], [ c], [Putative
hypothetical protein]
- Original Message -
From: "Chas. Owens"
To: 98447...@student.ucc.ie
Cc: "Shawn H. Corey" ,
beginners@perl.org
Subject: Re: if loop problem
Date: Fri, 31 Jul 2009 10:38:26 -0400
>On
On Fri, Jul 31, 2009 at 10:19, <98447...@student.ucc.ie> wrote:
> This is what the file actually looks like. All fileds are
> separated by tabs
snip
The following script has visibly correct data and works. This points
to your data being the problem. Try this one-liner to see what you
data really
putative secreted
protein
HMU0008073757617 c putative membrane
protein
HMU0009080729076 c UDP-glucose
4-epimerase
- Original Message -
From: "Shawn H. Corey"
To: 98447...@student.ucc.ie
Cc: beginners@perl.org
Subject: Re: if loop pr
98447...@student.ucc.ie wrote:
Hi All,
I am having a small problem with my if looops. I have
written a small script to parse a file I have
input:
HMU0003025224840DNA gyrase subunit B
HMU0004048415083putative membrane protein
HMU000505080
Hi All,
I am having a small problem with my if looops. I have
written a small script to parse a file I have
input:
HMU0003025224840DNA gyrase subunit B
HMU0004048415083putative membrane protein
HMU0005050805739c putative perip
