Re: This is really a question for the Bioperl forum

2011-08-16 Thread Brandon McCaig
On Tue, Aug 16, 2011 at 11:00 AM, ANJAN PURKAYASTHA wrote: > print("$bacteria->id\t$bacteria->name\n"); ... > and the following ouput: > Bio::Taxon=HASH(0x158dbe0)->id    Bio::Taxon=HASH(0x158dbe0)->name You appear to intend to call methods on $bacteria, but since you're within a string what's re

Re: This is really a question for the Bioperl forum

2011-08-16 Thread shawn wilson
On Aug 16, 2011 11:02 AM, "ANJAN PURKAYASTHA" wrote: > > I wrote a short test script for the Bio::DB::Taxonomy module: > > #!/usr/bin/perl -w > use strict; > use Bio::DB::Taxonomy; > > my ($nodesfile, $namesfile)= ('nodes.dmp', 'names.dmp'); > > my

This is really a question for the Bioperl forum

2011-08-16 Thread ANJAN PURKAYASTHA
Hello all, I posted this question in the bioperl forum- no replies after a day, so let's see if anyone here can help. I wrote a short test script for the Bio::DB::Taxonomy module: #!/usr/bin/perl -w use strict; use Bio::DB::Taxonomy; my ($nodesfile