On 12/05/2011 10:23, Nathalie Conte wrote:
HI,
I have this file format
chr start end strand
x 12 24 1
x 24 48 1
1 100 124 -1
1 124 148 -1
Basically I would like to create a new file by grouping the start of the
first line (12) with the end of the second line (48) and so on
the output should lo
On Thu, May 12, 2011 at 11:23 AM, Nathalie Conte wrote:
HI,
I have this file format
chrstartendstrand
x 12241
x24481
1100124-1
1124148-1
Basically I would like to create a new file by grouping the start of the
first line (12) with the
On Thu, May 12, 2011 at 10:23:29AM +0100, Nathalie Conte wrote:
> I have this file format
> chrstartendstrand
> x 12241
> I have this script to split and iterate over each line, but I don't
> know how to group 2 lines together, and take the start of the firt line
> and
On Thu, May 12, 2011 at 6:23 AM, Nathalie Conte wrote:
> I have this script to split and iterate over each line, but I don't know
> how to group 2 lines together, and take the start of the firt line and the
> end on the second line? could you please advise? thanks
>
>
You have a couple of option
Nathalie Conte wrote:
HI,
Hello,
I have this file format
chr start end strand
x 12 24 1
x 24 48 1
1 100 124 -1
1 124 148 -1
Basically I would like to create a new file by grouping the start of the
first line (12) with the end of the second line (48) and so on
the output should look like thi
You are almost there :-)
my ($helper1, $helper2);
my $counter = 1;
foreach my $line(@list){
chomp $line;
my @coordinates = split(/' '/, $region);
my $chromosome = $coordinates[0];
my $start = $coordinates[1];
my $end = $coordinates[2];
my $strand = $coordinates[3
