Hi,
I am trying to write a minimal web crawler. The aim is to discover new
URLs from the seed and crawl these new URLs further. The code is as follows:
use strict;
use warnings;
use Carp;
use Data::Dumper;
use WWW::Mechanize;
my $url = "http://foobar.com";; # example
my %links;
my $mech = W
Hi all,
I am trying to filter files from a directory (code provided below) by
comparing the contents of each file with a hash ref (a parsed id map
file provided as an argument). The code is working however, is extremely
slow. The .csv files (81 files) that I am reading are not very large
(l
Hi all,
I am trying to parse a tab-delimited file which has repeating lines.
This is causing problems while parsing it to the data structure (see
below). I would appreciate if you could help me solve this.
Thanks,
Aravind
sub parse {
my $pazar_file_path = shift;
my $pazar_data; #
Hi All,
foreach my $ncbi_tax_id ( keys %{$new_proteins}) {
my %kegg_map = ();
my $up_tax_map = read_map (
"$up_maps_dir/$taxon_labels{$ncbi_tax_id}.map");
foreach my $gene_id ( keys %{$new_proteins->{$ncbi_tax_id}}) {
foreach my $up_ac ( keys
second case it also pulls out
the REFERENCE information. I have provided the code below. If some one
could tell me where exactly I am going wrong (is it in the regex? or
otherwise) I would be glad!!
code :
use strict;
use warnings;
use Carp;
use Data::Dumper;
my $set = parse("/home/ven
Hi,
This is a snippet of the data
ENTRY K1 KO
NAMEE1.1.1.1, adh
DEFINITION alcohol dehydrogenase [EC:1.1.1.1]
PATHWAY ko00010 Glycolysis / Gluconeogenesis
ko00071 Fatty acid metabolism
ko00350 Tyrosine metabolism
gt; 'Glycolysis /
Gluconeogenesis'
'ko00071' => ' Fatty acid
metabolism'
},
};
Thanks,
Aravind
On 6/2/2011 5:06 PM, Rob Coops wrote:
On Thu, Jun 2, 2011 at 4:41 PM, venkates wrote:
On 6/2/2011 2:44 PM,
On 6/2/2011 2:44 PM, Rob Coops wrote:
On Thu, Jun 2, 2011 at 1:28 PM, venkates wrote:
On 6/2/2011 12:46 PM, John SJ Anderson wrote:
On Thu, Jun 2, 2011 at 06:41, venkates wrote:
Hi,
I want to parse a file with contents that looks as follows:
[ snip ]
Have you considered using this
On 6/2/2011 12:46 PM, John SJ Anderson wrote:
On Thu, Jun 2, 2011 at 06:41, venkates wrote:
Hi,
I want to parse a file with contents that looks as follows:
[ snip ]
Have you considered using this module? ->
<http://search.cpan.org/dist/BioPerl/Bio/SeqIO/kegg.pm>
Alternatively
Hi,
I want to parse a file with contents that looks as follows:
ENTRY K1 KO
NAMEE1.1.1.1, adh
DEFINITION alcohol dehydrogenase [EC:1.1.1.1]
PATHWAY ko00010 Glycolysis / Gluconeogenesis
ko00071 Fatty acid metabolism
///
ENTRY
Hi all,
I have written a piece of code which takes in to list of terms and
retrieves the intersection between the two list of terms. The code works
fine but it the intersection list has redundant in its terms. How do I
fix this? The code is given below.
#!/usr/bin/perl -w
use Carp;
use stri
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